View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18195_low_28 (Length: 358)

Name: NF18195_low_28
Description: NF18195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18195_low_28
NF18195_low_28
[»] chr3 (5 HSPs)
chr3 (18-358)||(30408224-30408564)
chr3 (139-358)||(30411148-30411370)
chr3 (142-353)||(30421267-30421478)
chr3 (93-278)||(30404484-30404670)
chr3 (142-258)||(30401136-30401252)


Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 18 - 358
Target Start/End: Complemental strand, 30408564 - 30408224
Alignment:
Q  18 ttaattagtctcatcatagtcaaaatcaaaattctcatttgtcaccatctatttaattttccacaaaaaacaaggttcataaactaatttgatatttccg 117  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30408564 ttaattattctcatcatagtcaaaatcaaaattctcatttgtcaccatctatttaattttccacaaaaaacaaggttcataaactaatttgatatttccg 30408465  T
Q  118 aacttcaaaataaaagtaagcgacactcaccaaccattcactatgttcctggttgctttcattgttaaacatcatcacagcaacaacaaaaccagtacct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30408464 aacttcaaaataaaagtaagcgacactcaccaaccattcactatgttcctggttgctttcattgttaaacatcatcacagcaacaacaaaaccagtacct 30408365  T
Q  218 ggtttcgtaggagcttgcgtgtgctcatcgatccaccccttgaataccctaccaaatccacgttcatcgagctcaccacttggatgaaagtttcttgtcg 317  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30408364 ggtttcgtaggagcttgcatgtgctcatcgatccaccccttgaataccctaccaaatccacgttcatcgagttcaccacttggatgaaagtttcttgtcg 30408265  T
Q  318 cagtttttacctcattgaatgtgaaacacttcaaattgttg 358  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30408264 cagtttttacctcattgaatgtgaaacacttcaaattgttg 30408224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 139 - 358
Target Start/End: Complemental strand, 30411370 - 30411148
Alignment:
Q  139 gacactcaccaaccattcactatgttcc---tggttgctttcattgttaaacatcatcacagcaacaacaaaaccagtacctggtttcgtaggagcttgc 235  Q
    ||||||||||||||||||| | ||| ||   ||| ||||||| ||| |||||||| | |||||||||||| ||||||||||| |||| ||||||||| ||    
T  30411370 gacactcaccaaccattcattctgtcccagttggctgctttctttgataaacatcttaacagcaacaacataaccagtaccttgtttagtaggagctagc 30411271  T
Q  236 gtgtgctcatcgatccaccccttgaataccctaccaaatccacgttcatcgagctcaccacttggatgaaagtttcttgtcgcagtttttacctcattga 335  Q
    ||||||||||||||||||||||| || || |||||||| ||||||||||| |  | ||| |||||||||||||   | || |||||||||| ||||||||    
T  30411270 gtgtgctcatcgatccaccccttaaagacactaccaaacccacgttcatccacttgaccgcttggatgaaagtacgtcgtagcagtttttagctcattga 30411171  T
Q  336 atgtgaaacacttcaaattgttg 358  Q
    |||||||||||||||||||||||    
T  30411170 atgtgaaacacttcaaattgttg 30411148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 142 - 353
Target Start/End: Complemental strand, 30421478 - 30421267
Alignment:
Q  142 actcaccaaccattcactatgttcctggttgctttcattgttaaacatcatcacagcaacaacaaaaccagtacctggtttcgtaggagcttgcgtgtgc 241  Q
    |||||||||||||||||||||| ||||  ||||||| | ||||| | || | ||||||| ||||||||||||||||||||| ||||||||| | ||||||    
T  30421478 actcaccaaccattcactatgtccctgactgctttcttggttaagcctcttgacagcaataacaaaaccagtacctggtttagtaggagctagtgtgtgc 30421379  T
Q  242 tcatcgatccaccccttgaataccctaccaaatccacgttcatcgagctcaccacttggatgaaagtttcttgtcgcagtttttacctcattgaatgtga 341  Q
    ||||||||||| ||||| ||||| | ||||||||||| |||  | | |  || |  |||| ||||||| |||||||| | | ||||||||||||  ||||    
T  30421378 tcatcgatccaacccttaaatacacaaccaaatccaccttcgccaatcatactatctggacgaaagttccttgtcgcggctcttacctcattgatagtga 30421279  T
Q  342 aacacttcaaat 353  Q
    ||||||||||||    
T  30421278 aacacttcaaat 30421267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 93 - 278
Target Start/End: Complemental strand, 30404670 - 30404484
Alignment:
Q  93 ttcataaactaatttgatattt-ccgaacttcaaaataaaagtaagcgacactcaccaaccattcactatgttcctggttgctttcattgttaaacatca 191  Q
    |||||||||||||||| ||||| || |||||||||   ||| |||  |||||| |||||||||||||||||| |||| ||||||| || ||| | | ||     
T  30404670 ttcataaactaatttgttattttcctaacttcaaacagaaattaaatgacacttaccaaccattcactatgtccctgattgcttttatcgttgagcctct 30404571  T
Q  192 tcacagcaacaacaaaaccagtacctggtttcgtaggagcttgcgtgtgctcatcgatccaccccttgaataccctaccaaatccac 278  Q
    |||||| |||  |||||||||||||| |||| || || ||| | ||||||||||||||||| ||||| ||||| | |||||||||||    
T  30404570 tcacagaaacggcaaaaccagtaccttgtttagtcggggctagtgtgtgctcatcgatccaacccttaaatacacaaccaaatccac 30404484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 258
Target Start/End: Complemental strand, 30401252 - 30401136
Alignment:
Q  142 actcaccaaccattcactatgttcctggttgctttcattgttaaacatcatcacagcaacaacaaaaccagtacctggtttcgtaggagcttgcgtgtgc 241  Q
    ||||||||||||||||||  ||||||||| |||  ||||||||| | || |||||||||||   ||||||| ||||||||| || ||  ||  |||||||    
T  30401252 actcaccaaccattcactgggttcctggtggctcgcattgttaagcttcttcacagcaacagtcaaaccagaacctggtttagtggggcctaacgtgtgc 30401153  T
Q  242 tcatcgatccacccctt 258  Q
    |||||||||||||||||    
T  30401152 tcatcgatccacccctt 30401136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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