View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18195_low_29 (Length: 350)
Name: NF18195_low_29
Description: NF18195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18195_low_29 |
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| [»] chr8 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 37704489 - 37704703
Alignment:
| Q |
1 |
tgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatttggcaacaatattaattcagtaaccatcatagaa |
100 |
Q |
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| T |
37704489 |
tgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatttggcaacaatattaattcagtaaccatcatagaa |
37704588 |
T |
|
| Q |
101 |
aagtttggtgttcattaaactaaataatatcttcgaagaccagactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgtgataagat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37704589 |
aagtttggtgttcattaaactaaataatatcttcgaagaccagactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgtgataagat |
37704688 |
T |
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| Q |
201 |
aacaaattcatttaa |
215 |
Q |
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||||||||||||||| |
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| T |
37704689 |
aacaaattcatttaa |
37704703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 37699010 - 37699228
Alignment:
| Q |
1 |
tgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatttggcaacaatattaattcagtaaccatcatagaa |
100 |
Q |
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|||||||| ||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
37699010 |
tgagtctaggtattcccttattttgtgttgggggtgcttttcataaccgtatactgatatgacatttggcaacaatattaattcagtaacaatcatagaa |
37699109 |
T |
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| Q |
101 |
aagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgtg---ata |
196 |
Q |
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| T |
37699110 |
aagtttggtgttcattaaactaaataacatcttggaaaaccaagacttttcgaacgtaattagcactaaagttggaatcttattgcaagttgtgataata |
37699209 |
T |
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| Q |
197 |
agataacaaattcatttaa |
215 |
Q |
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||||||||||||||||||| |
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| T |
37699210 |
agataacaaattcatttaa |
37699228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 216 - 350
Target Start/End: Original strand, 198074 - 198208
Alignment:
| Q |
216 |
ttgctctttagaattggggaatcagattcagctatctgattttcatcttcatttgttgtgtgctcttgtttgtcatgagcactttcagcagattttgtac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
198074 |
ttgctctttagaattggggaatcagattcagctatctgattttcatcttcatttgttgtgtgctcttgtttgtcatgagcactttcagcagattttgtac |
198173 |
T |
|
| Q |
316 |
ttctttgaacctcatcattttcccaatcccaatat |
350 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
198174 |
ttctttgaacctcatcattttcccaatcccaatat |
198208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 31 - 215
Target Start/End: Original strand, 37437584 - 37437768
Alignment:
| Q |
31 |
ggggtgcttttcataaacatatactgatatgacatttggcaacaatattaattcagtaaccatcatagaaaagtttggtgttcattaaactaaataatat |
130 |
Q |
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|||||||||||||||| | |||| |||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| || |
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| T |
37437584 |
ggggtgcttttcataaccgtatagtgatatgacaattggcaacaatattaattcaataacaatcatagaaaagtttggtgttcattaaactaaataacat |
37437683 |
T |
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| Q |
131 |
cttcgaagacc-agactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgtg---ataagataacaaattcatttaa |
215 |
Q |
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|| ||||||| |||||||| ||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
37437684 |
attggaagaccaagacttttcgaacgtaattagc----aagttggaatcttattgcaagttgtgataataagataacaaattcatttaa |
37437768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 87 - 214
Target Start/End: Original strand, 37698732 - 37698864
Alignment:
| Q |
87 |
taaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacca-gactttttgaacgtaatta----gcacgaaagttggaatctta |
181 |
Q |
| |
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|||| |||||| ||||||||||||||| ||||||||||||| ||||| |||||||| |||||||| |||||||||| |||| ||||||||||||||| |
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| T |
37698732 |
taacaatcatacaaaagtttggtgttcgttaaactaaataacatcttggaagaccaagacttttttaacgtaattaattagcactaaagttggaatctta |
37698831 |
T |
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| Q |
182 |
tttcaagttgtgataagataacaaattcattta |
214 |
Q |
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|| |||||||||||||||||||||||||||||| |
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| T |
37698832 |
ttgcaagttgtgataagataacaaattcattta |
37698864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 216 - 350
Target Start/End: Complemental strand, 30047941 - 30047807
Alignment:
| Q |
216 |
ttgctctttagaattggggaatcagattcagctatctgattttcatcttcatttgttgtgtgctcttgtttgtcatgagcactttcagcagattttgtac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30047941 |
ttgctctttagaattggggaatcagattcagctatctgattttcatcttcatttgttgtgtgctcttgtttgtcatgagcactttcagcagattttgtac |
30047842 |
T |
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| Q |
316 |
ttctttgaacctcatcattttcccaatcccaatat |
350 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
30047841 |
ttctttgaacctcatcattttcccaatcccaatat |
30047807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 216 - 350
Target Start/End: Complemental strand, 7160298 - 7160164
Alignment:
| Q |
216 |
ttgctctttagaattggggaatcagattcagctatctgattttcatcttcatttgttgtgtgctcttgtttgtcatgagcactttcagcagattttgtac |
315 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
7160298 |
ttgctctttagaattggggaatcagattcagctatctgattttcatcttcatttgttgtgtcctcttgtttgtcatgagcactttcagcagattctgtac |
7160199 |
T |
|
| Q |
316 |
ttctttgaacctcatcattttcccaatcccaatat |
350 |
Q |
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||||||||||||||||||||| ||||||||||||| |
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| T |
7160198 |
ttctttgaacctcatcatttttccaatcccaatat |
7160164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 216 - 350
Target Start/End: Complemental strand, 22363823 - 22363689
Alignment:
| Q |
216 |
ttgctctttagaattggggaatcagattcagctatctgattttcatcttcatttgttgtgtgctcttgtttgtcatgagcactttcagcagattttgtac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22363823 |
ttgctctttagaattggggaatcagattcagctatctgattttcatcttcatttgttgtgtgctcttgtttgtcatgagcactttcagcagattttgtac |
22363724 |
T |
|
| Q |
316 |
ttctttgaacctcatcattttcccaatcccaatat |
350 |
Q |
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|
||||||||||||||||||||||||||||||||||| |
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| T |
22363723 |
ttctttgaacctcatcattttcccaatcccaatat |
22363689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 216 - 350
Target Start/End: Original strand, 39951235 - 39951369
Alignment:
| Q |
216 |
ttgctctttagaattggggaatcagattcagctatctgattttcatcttcatttgttgtgtgctcttgtttgtcatgagcactttcagcagattttgtac |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39951235 |
ttgctctttagaattggggaatcagattcagctatctgattttcatcttcatttgttgtgtgctcttgtttgtcatgagcactttcagcagattttgtac |
39951334 |
T |
|
| Q |
316 |
ttctttgaacctcatcattttcccaatcccaatat |
350 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |
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|
| T |
39951335 |
ttctttgaacctcataattttcccaatcccaatat |
39951369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 216 - 350
Target Start/End: Original strand, 26219969 - 26220103
Alignment:
| Q |
216 |
ttgctctttagaattggggaatcagattcagctatctgattttcatcttcatttgttgtgtgctcttgtttgtcatgagcactttcagcagattttgtac |
315 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
26219969 |
ttgctccttagaattggggaatcaaattcagctatctgattttcatcttcatttgttatgtgctcttgtttgtcaggagcaatttcagcagattttgtac |
26220068 |
T |
|
| Q |
316 |
ttctttgaacctcatcattttcccaatcccaatat |
350 |
Q |
| |
|
| ||| ||||||||||||||| |||||| ||||| |
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|
| T |
26220069 |
taatttaaacctcatcattttctcaatccgaatat |
26220103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 216 - 350
Target Start/End: Complemental strand, 3944195 - 3944061
Alignment:
| Q |
216 |
ttgctctttagaattggggaatcagattcagctatctgattttcatcttcatttgttgtgtgctcttgtttgtcatgagcactttcagcagattttgtac |
315 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3944195 |
ttgctctttagaattagggaatcagattcagctatctgattttcatcttcatttgttgtgtgctcttgtttgtcatgagcactttcagcagattttgtac |
3944096 |
T |
|
| Q |
316 |
ttctttgaacctcatcattttcccaatcccaatat |
350 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
3944095 |
ttctttgaacctcatcattttcccaatcccaatat |
3944061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 94 - 215
Target Start/End: Complemental strand, 16841109 - 16840982
Alignment:
| Q |
94 |
catagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgt |
192 |
Q |
| |
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|||| |||||||||||||| | |||||||||||| ||||| ||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||| |
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|
| T |
16841109 |
catacaaaagtttggtgtttaataaactaaataaaatcttggaagaccaagactttttgaacgtaattagcac-taagttggaatcttattgcaagttgt |
16841011 |
T |
|
| Q |
193 |
g------ataagataacaaattcatttaa |
215 |
Q |
| |
|
| |||||||||||||||||||||| |
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|
| T |
16841010 |
gatattaataagataacaaattcatttaa |
16840982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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