View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18195_low_30 (Length: 343)
Name: NF18195_low_30
Description: NF18195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18195_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 15 - 331
Target Start/End: Original strand, 3316595 - 3316911
Alignment:
| Q |
15 |
actaatgctcctggattgcaattttatagtgctaattttgtgaagaatgataagggaaaaggagggtttgtttatcaaccacgttctgcactttgtttgg |
114 |
Q |
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| T |
3316595 |
actaatgcaccgggattgcaattttatagtgctaattttgtgaagaatgataagggaaaaggagggtttgtttatcaaccacgttctgcactttgtttgg |
3316694 |
T |
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| Q |
115 |
agagtcaagcttttcctgattctgttaatcatcctaattttccttcaactattgttacaaaagaaaagccttataagcatgttatgttgttgaagttttc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3316695 |
agagtcaagcttttcctgattctgttaatcatcctaattttccttcaactattgttacaaaagaaaagccttataagcatgttatgttgttgaagttttc |
3316794 |
T |
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| Q |
215 |
caccaaagtcccacatgctttttcacaattctaattgctctttctttctaagctacctttacagtttcccatgtatgcttcatgtatttattttgtaata |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
3316795 |
caccaaagtcccacatgctttttcacaattctaattgctctttctttctaagctacatttacaatttgccatgtatgcttcatgtatttattttgtaata |
3316894 |
T |
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| Q |
315 |
atgccttacactaccta |
331 |
Q |
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|||||||| |||||||| |
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| T |
3316895 |
atgccttatactaccta |
3316911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 257
Target Start/End: Original strand, 3323905 - 3324147
Alignment:
| Q |
15 |
actaatgctcctggattgcaattttatagtgctaattttgtgaagaatgataagggaaaaggagggtttgtttatcaaccacgttctgcactttgtttgg |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3323905 |
actaatgctcctggattgcaattttatagtgctaattttgtgaagaatgataagggaaaaggagggtttgtttatcaaccacgttctgcactttgtttgg |
3324004 |
T |
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| Q |
115 |
agagtcaagcttttcctgattctgttaatcatcctaattttccttcaactattgttacaaaagaaaagccttataagcatgttatgttgttgaagttttc |
214 |
Q |
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|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3324005 |
agagtcaagcttttcctgattctgttaatcatccaaaatttccttcaactattgttacaaaagaaaagccttacaagcatgttatgttgttgaagttttc |
3324104 |
T |
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| Q |
215 |
caccaaagtcccacatgctttttcacaattctaattgctcttt |
257 |
Q |
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| T |
3324105 |
caccaatgttccacatgctttctcacaattctaattactcttt |
3324147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 108 - 194
Target Start/End: Original strand, 2299662 - 2299748
Alignment:
| Q |
108 |
tgtttggagagtcaagcttttcctgattctgttaatcatcctaattttccttcaactattgttacaaaagaaaagccttataagcat |
194 |
Q |
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| T |
2299662 |
tgtttggaaagtcaagcttttcctgattcagttaatcatcctaattttccttcaacaatcgtgactccagaaaaaccttataagcat |
2299748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 18635534 - 18635485
Alignment:
| Q |
15 |
actaatgctcctggattgcaattttatagtgctaattttgtgaagaatga |
64 |
Q |
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||||||||| |||||||| |||||||||||||||| |||||||| ||||| |
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| T |
18635534 |
actaatgcttctggattgtaattttatagtgctaagtttgtgaataatga |
18635485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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