View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18195_low_31 (Length: 340)

Name: NF18195_low_31
Description: NF18195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18195_low_31
NF18195_low_31
[»] chr2 (2 HSPs)
chr2 (20-340)||(4783338-4783651)
chr2 (197-269)||(26616002-26616076)
[»] chr1 (2 HSPs)
chr1 (197-269)||(15474646-15474718)
chr1 (222-270)||(11788176-11788225)
[»] chr3 (2 HSPs)
chr3 (212-269)||(1885127-1885184)
chr3 (212-269)||(30528337-30528394)
[»] chr8 (3 HSPs)
chr8 (197-269)||(12503301-12503373)
chr8 (242-270)||(24628218-24628246)
chr8 (225-269)||(34743184-34743228)
[»] scaffold0500 (1 HSPs)
scaffold0500 (205-271)||(1099-1165)
[»] scaffold0027 (1 HSPs)
scaffold0027 (196-268)||(38240-38312)
[»] chr5 (1 HSPs)
chr5 (222-269)||(12066838-12066886)
[»] scaffold0097 (1 HSPs)
scaffold0097 (228-269)||(48082-48123)
[»] chr4 (2 HSPs)
chr4 (205-270)||(48136379-48136444)
chr4 (239-271)||(26310424-26310456)
[»] chr7 (1 HSPs)
chr7 (197-269)||(12868418-12868490)


Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 20 - 340
Target Start/End: Original strand, 4783338 - 4783651
Alignment:
Q  20 ttagctgtgccctatgcaactaactttctgtgttttaaggcttagtttgttgacactatagcagctacttgttgaaactgcatatccacttgtatataca 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4783338 ttagctgtgccctatgcaactaactttctgtgttttaaggcttagtttgttgacactatagcagctacttgttgaaactgcatatccacttgtatataca 4783437  T
Q  120 tctcactcttgtgaataataaacatggtcttttcatatatatctcactcttaactcaagctgaaagcaccatgtgtgttaagtcgcgcaagggtactttc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||    
T  4783438 tctcactcttgtgaataataaacatggtcttttcatatatatctcactcttaactcaagctgaaagca-------tgttaagtcgcgcaagggtactttc 4783530  T
Q  220 aaccattcagttgggaggaagtgttttttgttgggagaaaagcatttttcaattataatgttttatgatatgaagatactagccaaatgttgccaaggta 319  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4783531 gtccattcagttgggaggaagtgttttttgttgggagaaaagcatttttcaattataatgttttatgatatgaagatactagccaaatgttggcaaggta 4783630  T
Q  320 agcataattccaatatggata 340  Q
    |||||||||||||||||||||    
T  4783631 agcataattccaatatggata 4783651  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 269
Target Start/End: Complemental strand, 26616076 - 26616002
Alignment:
Q  197 ttaagtcgcgcaagggtactttcaaccattcagttgggaggaagtg--ttttttgttgggagaaaagcatttttc 269  Q
    ||||||| ||||||||||||||   |||||||||||||||| ||||  ||||||||||||| |||| ||||||||    
T  26616076 ttaagtcacgcaagggtacttttgtccattcagttgggagggagtgttttttttgttgggataaaatcatttttc 26616002  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 269
Target Start/End: Original strand, 15474646 - 15474718
Alignment:
Q  197 ttaagtcgcgcaagggtactttcaaccattcagttgggaggaagtgttttttgttgggagaaaagcatttttc 269  Q
    ||||||||||||  |||||||||  ||||||| ||||||||||||||||||||||||||||| | ||||||||    
T  15474646 ttaagtcgcgcataggtactttcgtccattcaattgggaggaagtgttttttgttgggagaagaccatttttc 15474718  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 222 - 270
Target Start/End: Complemental strand, 11788225 - 11788176
Alignment:
Q  222 ccattcagttgggaggaagtgttttttgttgggagaaa-agcatttttca 270  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11788225 ccattcagttgggaggaagtgttttttgttgggagaaagagcatttttca 11788176  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 212 - 269
Target Start/End: Complemental strand, 1885184 - 1885127
Alignment:
Q  212 gtactttcaaccattcagttgggaggaagtgttttttgttgggagaaaagcatttttc 269  Q
    ||||||||  |||||||||||||||| ||||||||||| |||||||| ||||||||||    
T  1885184 gtactttcgcccattcagttgggagggagtgttttttgatgggagaagagcatttttc 1885127  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 269
Target Start/End: Complemental strand, 30528394 - 30528337
Alignment:
Q  212 gtactttcaaccattcagttgggaggaagtgttttttgttgggagaaaagcatttttc 269  Q
    ||||||||| | |||||||||| ||  ||||||||||||||||||||||||| |||||    
T  30528394 gtactttcatcaattcagttggtagtgagtgttttttgttgggagaaaagcaattttc 30528337  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 197 - 269
Target Start/End: Complemental strand, 12503373 - 12503301
Alignment:
Q  197 ttaagtcgcgcaagggtactttcaaccattcagttgggaggaagtgttttttgttgggagaaaagcatttttc 269  Q
    ||||||||||||  | |||||||  | |||||||||||||| |||||||||||||||||||| |||| |||||    
T  12503373 ttaagtcgcgcagagatactttcgtcgattcagttgggagggagtgttttttgttgggagaagagcaattttc 12503301  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 270
Target Start/End: Complemental strand, 24628246 - 24628218
Alignment:
Q  242 gttttttgttgggagaaaagcatttttca 270  Q
    |||||||||||||||||||||||||||||    
T  24628246 gttttttgttgggagaaaagcatttttca 24628218  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 269
Target Start/End: Complemental strand, 34743228 - 34743184
Alignment:
Q  225 ttcagttgggaggaagtgttttttgttgggagaaaagcatttttc 269  Q
    ||||||||||||| ||  |||||||||||||||| ||||||||||    
T  34743228 ttcagttgggagggagcattttttgttgggagaagagcatttttc 34743184  T

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Target: scaffold0500 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 271
Target Start/End: Complemental strand, 1165 - 1099
Alignment:
Q  205 cgcaagggtactttcaaccattcagttgggaggaagtgttttttgttgggagaaaagcatttttcaa 271  Q
    ||||||||||||||||  ||| ||||||||||  |||| |||||| |||||||| ||||||||||||    
T  1165 cgcaagggtactttcattcatccagttgggagagagtgatttttgatgggagaagagcatttttcaa 1099  T

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Target: scaffold0027 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 268
Target Start/End: Original strand, 38240 - 38312
Alignment:
Q  196 gttaagtcgcgcaagggtactttcaaccattcagttgggaggaagtgttttttgttgggagaaaagcattttt 268  Q
    ||||||||||||| |||||||| |  ||||||| ||| ||||  ||||||||||||||||||| | |||||||    
T  38240 gttaagtcgcgcatgggtacttccgtccattcaattgagagggggtgttttttgttgggagaagaacattttt 38312  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 269
Target Start/End: Complemental strand, 12066886 - 12066838
Alignment:
Q  222 ccattcagttgggaggaagtgtttttt-gttgggagaaaagcatttttc 269  Q
    |||||||||||||||| |||||||||| |||||||||| ||||||||||    
T  12066886 ccattcagttgggagggagtgtttttttgttgggagaagagcatttttc 12066838  T

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Target: scaffold0097 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 48082 - 48123
Alignment:
Q  228 agttgggaggaagtgttttttgttgggagaaaagcatttttc 269  Q
    |||||||| |||||||||||||||||||||| |||| |||||    
T  48082 agttgggatgaagtgttttttgttgggagaatagcaattttc 48123  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 270
Target Start/End: Original strand, 48136379 - 48136444
Alignment:
Q  205 cgcaagggtactttcaaccattcagttgggaggaagtgttttttgttgggagaaaagcatttttca 270  Q
    |||||||||||||||| ||||| |||||   || ||| |||||||||||||||| ||| |||||||    
T  48136379 cgcaagggtactttcatccatttagttgactgggagtattttttgttgggagaagagcctttttca 48136444  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 271
Target Start/End: Original strand, 26310424 - 26310456
Alignment:
Q  239 agtgttttttgttgggagaaaagcatttttcaa 271  Q
    ||||||||||||||||||||||||| |||||||    
T  26310424 agtgttttttgttgggagaaaagcaattttcaa 26310456  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 269
Target Start/End: Complemental strand, 12868490 - 12868418
Alignment:
Q  197 ttaagtcgcgcaagggtactttcaaccattcagttgggaggaagtgttttttgttgggagaaaagcatttttc 269  Q
    ||||||| |||||||| ||||||| |||| || |||| ||  ||||||||||| |||||||| |||| |||||    
T  12868490 ttaagtcacgcaagggcactttcatccatgcacttggtagtgagtgttttttgatgggagaagagcaattttc 12868418  T

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