View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18195_low_34 (Length: 320)
Name: NF18195_low_34
Description: NF18195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18195_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 14 - 304
Target Start/End: Complemental strand, 48368213 - 48367923
Alignment:
| Q |
14 |
catcacattcgcagtatgaatgaagaaaaaagtagttgtggtccttggtagtacatagtactgattcattcatcagttaatgtgaatgtaccaaacaaaa |
113 |
Q |
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| T |
48368213 |
catcacattcgcagtatgaatgaagaaaaaagtagttgtggtccttggtagtacatagtactgattcattcatcagttaatgtgaatgtaccaaacaaaa |
48368114 |
T |
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| Q |
114 |
gtaaattaaccggacaataattgagtacttacctgttggagtggtcataacaatttcatactcttcaccaactttaacctcagtgagtcccactggctga |
213 |
Q |
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| T |
48368113 |
gtaaattaaccggacaataattgagtacttacctgttggagtggtcataacaatttcatactcttcaccaactttaacctcagtgagtcccactggctga |
48368014 |
T |
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| Q |
214 |
ggattaacacaaaggaaagtattttcattctcaagctgtgtgagaggaatgaactcaaagtaaccaatttgaggaagcacggcataagttg |
304 |
Q |
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| T |
48368013 |
ggattaacacaaaggaaagtattttcattctcaagctgtgtgagaggaatgaactcaaagtaaccaatttgaggaagcacggcgtaagttg |
48367923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 137 - 304
Target Start/End: Original strand, 18045378 - 18045545
Alignment:
| Q |
137 |
agtacttacctgttggagtggtcataacaatttcatactcttcaccaactttaacctcagtgagtcccactggctgaggattaacacaaaggaaagtatt |
236 |
Q |
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| T |
18045378 |
agtacttacctgctgaattggtcacaacaatttcatattctttaccaaccttcacctcagtgagtcccattggctgaggatcagcacaaaggaaagtacc |
18045477 |
T |
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| Q |
237 |
ttcattctcaagctgtgtgagaggaatgaactcaaagtaaccaatttgaggaagcacggcataagttg |
304 |
Q |
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| T |
18045478 |
atcgttgttaagctgagtgagaggaatgaactcaaagtatccattttgaggaaacacggcataagttg |
18045545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 137 - 289
Target Start/End: Original strand, 13979521 - 13979673
Alignment:
| Q |
137 |
agtacttacctgttggagtggtcataacaatttcatactcttcaccaactttaacctcagtgagtcccactggctgaggattaacacaaaggaaagtatt |
236 |
Q |
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|||| ||||||| || | |||||| |||||||||||| ||||||||||| || |||||||||||||||||||| ||||||| ||||||||| |||| |
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| T |
13979521 |
agtatttacctgctgaattggtcagaacaatttcatattcttcaccaaccttcacctcagtgagtcccactggatgaggatcaacacaaagctcagtacc |
13979620 |
T |
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| Q |
237 |
ttcattctcaagctgtgtgagaggaatgaactcaaagtaaccaatttgaggaa |
289 |
Q |
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| T |
13979621 |
ctcattcttaacctgtgtgagaggaatgaactcaaagtatccattttgaggaa |
13979673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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