View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18195_low_38 (Length: 309)
Name: NF18195_low_38
Description: NF18195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18195_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 74 - 296
Target Start/End: Complemental strand, 14743302 - 14743080
Alignment:
| Q |
74 |
gtagtggttgtggaacaaagtatttccatcatctcaacacggtgttgctcggttaacaaacaatgctgctcaggtaacatagtattgatgttatctcttg |
173 |
Q |
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| T |
14743302 |
gtagtggttgtggaacaaagtatttccatcatctcaacacggtgttgctcggttaacaaacaatgctgctcaggtaacatagtattgatgttatctcttg |
14743203 |
T |
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| Q |
174 |
tatttacctttttagataatcatatgatgttaattaataaatatttattcagcaggagcgacatgagaggtgcttttgtttctctaaatctaaatattca |
273 |
Q |
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| T |
14743202 |
tatttacctttttagataatcatatgatgttaattaataaatatttattcagcaggagcgacatgagaggtgcttttgtttctctaaatctaaatattca |
14743103 |
T |
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| Q |
274 |
aaatctccaaaacttaaggtgtt |
296 |
Q |
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| T |
14743102 |
aaatctccaaaacttaaggtgtt |
14743080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 238 - 301
Target Start/End: Complemental strand, 14746168 - 14746105
Alignment:
| Q |
238 |
gagaggtgcttttgtttctctaaatctaaatattcaaaatctccaaaacttaaggtgttcttct |
301 |
Q |
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||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
14746168 |
gagaggtgcttttgtttctctaaatctaaatattcaagaattccaaaacttaaggtgttcttct |
14746105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 14289443 - 14289503
Alignment:
| Q |
158 |
ttgatgttatctcttgtatttacctttttagataatcatatgatgttaattaataaatatt |
218 |
Q |
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| T |
14289443 |
ttgatgttatctcttgtattttcctttttagataatggtctgctgttgattaataaatatt |
14289503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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