View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18195_low_4 (Length: 782)
Name: NF18195_low_4
Description: NF18195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18195_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 369 - 771
Target Start/End: Original strand, 47852740 - 47853141
Alignment:
| Q |
369 |
gttacaagaagagacctcctccagatttttcttactgtttgaatcaaggtataacacatccgaaaatcctctgctcttggctctattttgtgccatcaag |
468 |
Q |
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| T |
47852740 |
gttacaagaagagacctcctccagatttttcttactgtttgaatcaaggtataacacatccgaaaatcctctgctcttggctctattttgtgccatcaag |
47852839 |
T |
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| Q |
469 |
acctacatgtcaaggcaatcagtgctatgctattgagtgctacggtgatgtatgtgtgatgtggttcagcattaggtacattagttaaaaacaaggcgat |
568 |
Q |
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| T |
47852840 |
acctacatgtcaaggcaatcagtgctatgctattgagtgctacggtgatgtatgtgtgatgtggttcagcattaggtacattagttaaaaacaaggcgat |
47852939 |
T |
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| Q |
569 |
taaaatgaatcacattcgatcactcaaattattaccagtgtcaggtgtgtgatttatgtgtttgtgcttcatatgcatttataagtgcgtgattggatag |
668 |
Q |
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| T |
47852940 |
taaaatgaatcacattcgatcactcaaattattaccagtgtc-ggtgtgtgatttatgtgtttgtgcttcatatgcatttataagtgcgtgattggatag |
47853038 |
T |
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| Q |
669 |
acgggtttgaaagtgactttagcagaatcacgttacaaccataattattacaaaagctacatttcataacttcaacaaaatcacaattccaccactattt |
768 |
Q |
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| T |
47853039 |
acggatttgaaagtgactttagcagaatcacgttacaaccataattattacaaaagctacatttcataacttcaacaaaatcacaattccaccactattt |
47853138 |
T |
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| Q |
769 |
cat |
771 |
Q |
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| T |
47853139 |
cat |
47853141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 314
Target Start/End: Original strand, 47852401 - 47852697
Alignment:
| Q |
18 |
ttactaaatattgagaatagnnnnnnnttcattccaatccttagtttttagcaaagtacatagtgtaacaaacttttggtgacaagtttctttcttttat |
117 |
Q |
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| T |
47852401 |
ttactaaatattgagaatagcccccccttcattccaatccttagtttttagcaaagtacatagtgtaacaaacttttggtgacaagtttctttcttttat |
47852500 |
T |
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| Q |
118 |
tgtatgtttgtctttcttttacattagattagattaaaccctatcatcagaacctctagctctgaaattttccatgtatactcatgtcagcttgcagcaa |
217 |
Q |
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| T |
47852501 |
tgtatgtttgtctttcttttacattagattagattaaaccctatcatcagaacctctagctctgaacttttccatgtatactcatgtcagcttgcagcaa |
47852600 |
T |
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| Q |
218 |
gcacttgttttaacttattgcattttgcttttcattgctaataatatttcgagtattgcaatttgcaacaagcttaagaaaacaacacaccttacat |
314 |
Q |
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| T |
47852601 |
gcacttgttttaacttattgcattttgcttttcattgctaataatattttgagtattgcaatttgcaacaagcttaagaaaacaacacaccttacat |
47852697 |
T |
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