View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18195_low_41 (Length: 289)

Name: NF18195_low_41
Description: NF18195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18195_low_41
NF18195_low_41
[»] chr1 (6 HSPs)
chr1 (1-259)||(5031088-5031343)
chr1 (135-178)||(18398642-18398685)
chr1 (137-171)||(26525557-26525591)
chr1 (141-202)||(31426771-31426832)
chr1 (146-198)||(24124824-24124876)
chr1 (146-190)||(34808565-34808609)
[»] chr8 (3 HSPs)
chr8 (142-201)||(7380055-7380114)
chr8 (137-189)||(31511716-31511768)
chr8 (141-201)||(35061646-35061706)
[»] chr5 (4 HSPs)
chr5 (150-202)||(20114724-20114776)
chr5 (142-202)||(26400202-26400262)
chr5 (152-186)||(36868738-36868772)
chr5 (141-186)||(11156847-11156892)
[»] chr4 (3 HSPs)
chr4 (142-202)||(56497598-56497658)
chr4 (135-189)||(41536926-41536980)
chr4 (154-202)||(10006363-10006411)
[»] chr7 (5 HSPs)
chr7 (150-199)||(5352348-5352397)
chr7 (153-202)||(35142139-35142188)
chr7 (153-182)||(40677202-40677231)
chr7 (137-202)||(48837873-48837938)
chr7 (141-177)||(10461779-10461815)
[»] chr2 (6 HSPs)
chr2 (153-190)||(231595-231632)
chr2 (153-202)||(22523002-22523051)
chr2 (161-189)||(10664494-10664522)
chr2 (142-186)||(19156170-19156214)
chr2 (146-202)||(24393260-24393316)
chr2 (150-186)||(28120660-28120696)
[»] chr6 (2 HSPs)
chr6 (137-189)||(14515295-14515347)
chr6 (150-202)||(14679144-14679196)


Alignment Details
Target: chr1 (Bit Score: 156; Significance: 6e-83; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 5031343 - 5031088
Alignment:
Q  1 ctcagagttactataataaccgaacgtataactacagcaaggtataattgttgtagcaagtaaccataagttgatctattgtgtttcaaatttttgtgta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5031343 ctcagagttactataataaccgaacgtataactacagcaaggtctaattgttgtagcaagtaaccataagttgatctattgtgtttcaaatttttgtgta 5031244  T
Q  101 tggagtgattaataacatatannnnnnnnngtgggtttaattcaattgttaaggacaatacataatatatacaaagtttgaggttcgaataccggccacc 200  Q
    |||||||||||||||||||||         ||||||||||  || ||| |||||||||| |||||||||||||||||| | |||||||||| ||||||||    
T  5031243 tggagtgattaataacatata--tttttttgtgggtttaacacagttgataaggacaatgcataatatatacaaagttcggggttcgaatatcggccacc 5031146  T
Q  201 acnnnnnnnnnntatatctttttcaaacaccaattgttcctccctccatctgttattat 259  Q
    ||          |||||||||||||||||||||||||||||||||||||||||||||||    
T  5031145 ac-caaaaaaaatatatctttttcaaacaccaattgttcctccctccatctgttattat 5031088  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 178
Target Start/End: Original strand, 18398642 - 18398685
Alignment:
Q  135 gtttaattcaattgttaaggacaatacataatatatacaaagtt 178  Q
    |||||||||| ||| |||||||||||||||||||| ||||||||    
T  18398642 gtttaattcagttggtaaggacaatacataatatagacaaagtt 18398685  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 171
Target Start/End: Complemental strand, 26525591 - 26525557
Alignment:
Q  137 ttaattcaattgttaaggacaatacataatatata 171  Q
    |||||||||||| ||||||||||||||||||||||    
T  26525591 ttaattcaattggtaaggacaatacataatatata 26525557  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 202
Target Start/End: Original strand, 31426771 - 31426832
Alignment:
Q  141 ttcaattgttaaggacaatacataatatatacaaagtttgaggttcgaataccggccaccac 202  Q
    ||||||||  ||| ||||| ||||| ||||| || ||||||||||||||| |||||||||||    
T  31426771 ttcaattggcaagaacaatgcataaaatatataaggtttgaggttcgaatcccggccaccac 31426832  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 24124876 - 24124824
Alignment:
Q  146 ttgttaaggacaatacataatatatacaaagtttgaggttcgaataccggcca 198  Q
    |||||||||||||| |||||||||| ||| ||| |||||| |||| |||||||    
T  24124876 ttgttaaggacaatgcataatatatgcaaggttcgaggtttgaatcccggcca 24124824  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 34808609 - 34808565
Alignment:
Q  146 ttgttaaggacaatacataatatatacaaagtttgaggttcgaat 190  Q
    |||||||||||||| |||||||||| ||| ||| |||||||||||    
T  34808609 ttgttaaggacaatgcataatatatgcaaggttcgaggttcgaat 34808565  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 201
Target Start/End: Original strand, 7380055 - 7380114
Alignment:
Q  142 tcaattgttaaggacaatacataatatatacaaagtttgaggttcgaataccggccacca 201  Q
    |||||||||| |||||||||||||||||||||| ||| | ||||||||| ||||||||||    
T  7380055 tcaattgttatggacaatacataatatatacaaggttgggggttcgaatcccggccacca 7380114  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 31511716 - 31511768
Alignment:
Q  137 ttaattcaattgttaaggacaatacataatatatacaaagtttgaggttcgaa 189  Q
    |||||||||||||| || ||||| |||||| |||||||| | |||||||||||    
T  31511716 ttaattcaattgttgagaacaatgcataatgtatacaaaatctgaggttcgaa 31511768  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 35061646 - 35061706
Alignment:
Q  141 ttcaattgttaaggacaatacataatatatacaaagtttgaggttcgaataccggccacca 201  Q
    |||||||| ||  |||||||||||||||||||||  |||||||||| ||  ||||||||||    
T  35061646 ttcaattgatagagacaatacataatatatacaacatttgaggttcaaaccccggccacca 35061706  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 20114724 - 20114776
Alignment:
Q  150 taaggacaatacataatatatacaaagtttgaggttcgaataccggccaccac 202  Q
    |||||||||| ||||| |||||||||||||||||||| ||| ||| |||||||    
T  20114724 taaggacaatgcataaaatatacaaagtttgaggttcaaatcccgaccaccac 20114776  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 202
Target Start/End: Complemental strand, 26400262 - 26400202
Alignment:
Q  142 tcaattgttaaggacaatacataatatatacaaagtttgaggttcgaataccggccaccac 202  Q
    ||||||| |||||||||| |||| ||||||||||||| || ||||||||  ||||||||||    
T  26400262 tcaattggtaaggacaatgcatagtatatacaaagttcgaagttcgaatctcggccaccac 26400202  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 186
Target Start/End: Complemental strand, 36868772 - 36868738
Alignment:
Q  152 aggacaatacataatatatacaaagtttgaggttc 186  Q
    |||||||| ||||||||||||||||||||||||||    
T  36868772 aggacaatgcataatatatacaaagtttgaggttc 36868738  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 11156847 - 11156892
Alignment:
Q  141 ttcaattgttaaggacaatacataatatatacaaagtttgaggttc 186  Q
    |||| |||||| ||| |||||||||||||||||| |||||||||||    
T  11156847 ttcagttgttatggataatacataatatatacaaggtttgaggttc 11156892  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 202
Target Start/End: Complemental strand, 56497658 - 56497598
Alignment:
Q  142 tcaattgttaaggacaatacataatatatacaaagtttgaggttcgaataccggccaccac 202  Q
    ||||||| |||||||||| |||||||||| ||| || || ||||||||| |||||||||||    
T  56497658 tcaattggtaaggacaatgcataatatatgcaaggtctggggttcgaatcccggccaccac 56497598  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 189
Target Start/End: Original strand, 41536926 - 41536980
Alignment:
Q  135 gtttaattcaattgttaaggacaatacataatatatacaaagtttgaggttcgaa 189  Q
    |||||| ||||||| ||||||||||||||||||||| ||| ||| || |||||||    
T  41536926 gtttaactcaattgataaggacaatacataatatatgcaaggttcgaagttcgaa 41536980  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 202
Target Start/End: Original strand, 10006363 - 10006411
Alignment:
Q  154 gacaatacataatatatacaaagtttgaggttcgaataccggccaccac 202  Q
    |||||| |||||||||| ||| || || |||||||||||||||||||||    
T  10006363 gacaatgcataatatatgcaaggtctggggttcgaataccggccaccac 10006411  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 5352348 - 5352397
Alignment:
Q  150 taaggacaatacataatatatacaaagtttgaggttcgaataccggccac 199  Q
    ||||||||||||||||||||||||| ||  ||| ||||||| ||||||||    
T  5352348 taaggacaatacataatatatacaaggtccgagattcgaatcccggccac 5352397  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 35142188 - 35142139
Alignment:
Q  153 ggacaatacataatatatacaaagtttgaggttcgaataccggccaccac 202  Q
    ||||||| |||||||||| ||||||||||||||||||  ||| |||||||    
T  35142188 ggacaatgcataatatatgcaaagtttgaggttcgaaccccgaccaccac 35142139  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 182
Target Start/End: Original strand, 40677202 - 40677231
Alignment:
Q  153 ggacaatacataatatatacaaagtttgag 182  Q
    ||||||||||||||||||||||||||||||    
T  40677202 ggacaatacataatatatacaaagtttgag 40677231  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 202
Target Start/End: Original strand, 48837873 - 48837938
Alignment:
Q  137 ttaattcaattgttaaggacaatacataatatatacaaagtttgaggttcgaataccggccaccac 202  Q
    |||| ||||||| || ||| ||| |||||||||| ||||||||| ||||||||  |||||||||||    
T  48837873 ttaactcaattggtatggataatgcataatatatgcaaagtttggggttcgaaccccggccaccac 48837938  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 177
Target Start/End: Complemental strand, 10461815 - 10461779
Alignment:
Q  141 ttcaattgttaaggacaatacataatatatacaaagt 177  Q
    |||||||| |||||||||| |||||||||||||||||    
T  10461815 ttcaattgataaggacaatgcataatatatacaaagt 10461779  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 190
Target Start/End: Complemental strand, 231632 - 231595
Alignment:
Q  153 ggacaatacataatatatacaaagtttgaggttcgaat 190  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  231632 ggacaatacataatatatgcaaggtttgaggttcgaat 231595  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 22523051 - 22523002
Alignment:
Q  153 ggacaatacataatatatacaaagtttgaggttcgaataccggccaccac 202  Q
    |||||||||||||||||| ||| ||| ||||||| ||| |||||||||||    
T  22523051 ggacaatacataatatatgcaaggttcgaggttcaaatcccggccaccac 22523002  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 189
Target Start/End: Complemental strand, 10664522 - 10664494
Alignment:
Q  161 cataatatatacaaagtttgaggttcgaa 189  Q
    |||||||||||||||||||||||||||||    
T  10664522 cataatatatacaaagtttgaggttcgaa 10664494  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 186
Target Start/End: Complemental strand, 19156214 - 19156170
Alignment:
Q  142 tcaattgttaaggacaatacataatatatacaaagtttgaggttc 186  Q
    ||||||| |||||||| |||||||||||| ||| |||||||||||    
T  19156214 tcaattggtaaggacagtacataatatatgcaaggtttgaggttc 19156170  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 202
Target Start/End: Original strand, 24393260 - 24393316
Alignment:
Q  146 ttgttaaggacaatacataatatatacaaagtttgaggttcgaataccggccaccac 202  Q
    |||||||||||||| |||||||||| ||| || |||||||||||  |||| ||||||    
T  24393260 ttgttaaggacaatgcataatatatgcaaggtctgaggttcgaaccccggacaccac 24393316  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 28120696 - 28120660
Alignment:
Q  150 taaggacaatacataatatatacaaagtttgaggttc 186  Q
    ||||||||||||||||||||||||||||  |||||||    
T  28120696 taaggacaatacataatatatacaaagtcagaggttc 28120660  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 14515347 - 14515295
Alignment:
Q  137 ttaattcaattgttaaggacaatacataatatatacaaagtttgaggttcgaa 189  Q
    |||| ||| |||||||||||||| ||||||||||| |||||||  ||||||||    
T  14515347 ttaactcagttgttaaggacaatgcataatatatataaagtttagggttcgaa 14515295  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 202
Target Start/End: Original strand, 14679144 - 14679196
Alignment:
Q  150 taaggacaatacataatatatacaaagtttgaggttcgaataccggccaccac 202  Q
    |||||||||| |||||||||| ||| ||||| | ||||||| |||||||||||    
T  14679144 taaggacaatgcataatatatgcaaggtttgggtttcgaatcccggccaccac 14679196  T

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