View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18195_low_42 (Length: 284)
Name: NF18195_low_42
Description: NF18195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18195_low_42 |
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| [»] scaffold0471 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 42443917 - 42444187
Alignment:
| Q |
1 |
tactatatataaagaaaggaaaatgctgaaatacacggcaatttttgtcgtgtaatttgcacgaacaagtttttaactacgatttactannnnnnnnaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
42443917 |
tactatatataaagaaaggaaaatgctgaaatacacgacaatttttgtcgtgtaatttgcacgaacaagtttttaactacgatttcctattttttttaat |
42444016 |
T |
|
| Q |
101 |
ttggattcaacagaaaatgacaaatcttgcatgtgctgtatatttcttatgagaaatcatacaaacatctcatttggtggtctatatatgtgtcttacct |
200 |
Q |
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|||||| ||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
42444017 |
ttggatccaacagaaaatgacaaatcttgcctctgctgtatattttctatgagaaatcatacaaacatctcattcggtggtctatatatatgtcttacct |
42444116 |
T |
|
| Q |
201 |
tactattgctttggtaaca-nnnnnnnnaatatatactactgcttttgtatataatttaatattggaagtg |
270 |
Q |
| |
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||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
42444117 |
tactattgctttggtaacattattttttaacatatactactgcttttgtatataatttaatattggaagtg |
42444187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 10589631 - 10589562
Alignment:
| Q |
147 |
ttatgagaaatcatacaaacatctcatttggtggtctatatatgtgtcttaccttactattgctttggta |
216 |
Q |
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| T |
10589631 |
ttatgagaaatcataaaaacatctcatttgatggtctaaatatgtgtcttacctcaccattgctttggta |
10589562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 27 - 270
Target Start/End: Complemental strand, 2360155 - 2359911
Alignment:
| Q |
27 |
tgaaatacacggcaatttttgtcgtgtaatttgcacgaacaagtttttaactacgatttactannnnnnnnaatttggattcaacagaaaatgacaaatc |
126 |
Q |
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||||||||||| |||| ||||| ||||||||||||||||||||||| |||||| ||| ||| |||||||||||||||||||||||||||| |
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| T |
2360155 |
tgaaatacacgacaatgtttgttgtgtaatttgcacgaacaagtttaaaactaccattaacttttttttttaatttggattcaacagaaaatgacaaatt |
2360056 |
T |
|
| Q |
127 |
ttgcatgtgctgtatatttcttatgagaaatcatacaaacatctcatttggtggtctatatatgtgtcttaccttactattgctttggtaaca-nnnnnn |
225 |
Q |
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| T |
2360055 |
tggcttgtcctgtaaatttcctttgagaaatcataaaaacatctcattcggtgctctaaatatgtgtcttacttcaccattgctttggtaccattgtttt |
2359956 |
T |
|
| Q |
226 |
nnaatatatactactgcttttgtatataatttaatattggaagtg |
270 |
Q |
| |
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| T |
2359955 |
ctaatatatactattgcttttgtatataatttaatattggaagtg |
2359911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 98 - 219
Target Start/End: Complemental strand, 6020341 - 6020220
Alignment:
| Q |
98 |
aatttggattcaacagaaaatgacaaatcttgcatgtgctgtatatttcttatgagaaatcatacaaacatctcatttggtggtctatatatgtgtctta |
197 |
Q |
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|
||||| ||||||| |||||||||||||| |||| ||||||||||||||| ||||||||| |||| ||| |||||||| |||||||||||||||||||||| |
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| T |
6020341 |
aatttagattcaatagaaaatgacaaattttgcttgtgctgtatatttcctatgagaaaacataaaaaaatctcattcggtggtctatatatgtgtctta |
6020242 |
T |
|
| Q |
198 |
ccttactattgctttggtaaca |
219 |
Q |
| |
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||| || ||||||||||||||| |
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| T |
6020241 |
cctcaccattgctttggtaaca |
6020220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 29 - 219
Target Start/End: Original strand, 48583607 - 48583798
Alignment:
| Q |
29 |
aaatacacggcaatttttgtcgtgtaatttgcacgaacaagtttttaactacgatttactannnnnnnn-aatttggattcaacagaaaatgacaaatct |
127 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||| |||| |||||| |||| ||| ||||||||||||| | ||||||| |||| | |
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| T |
48583607 |
aaatacacgacaatgtttgtcgtgtaatttgcacgaacatgtttgtaactatcatttgctatctttttttaatttggattcaatataaaatgataaattt |
48583706 |
T |
|
| Q |
128 |
tgcatgtgctgtatatttcttatgagaaatcatacaaacatctcatttggtggtctatatatgtgtcttaccttactattgctttggtaaca |
219 |
Q |
| |
|
||| |||||||||||||| |||||||||||||| |||||||| ||||||||||||| | | | ||||||||| || ||||||||||||||| |
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| T |
48583707 |
tgcttgtgctgtatattttctatgagaaatcataaaaacatcttatttggtggtctaaacacgcgtcttacctcaccattgctttggtaaca |
48583798 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 98 - 270
Target Start/End: Complemental strand, 7247393 - 7247230
Alignment:
| Q |
98 |
aatttggattcaacagaaaatgacaaatcttgcatgtgctgtatatttcttatgagaaatcatacaaacatctcatttggtggtctatatatgtgtctta |
197 |
Q |
| |
|
||||||||||||| |||||||||||||| |||| ||||||||| ||| ||||||| |||||||||||| ||||||||| |||||||||||| |
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| T |
7247393 |
aatttggattcaatagaaaatgacaaattttgcttgtgctgtaaatt----------aatcataaaaacatctcattcggtggtctaaatatgtgtctta |
7247304 |
T |
|
| Q |
198 |
ccttactattgctttggtaacannnnnnnna-atatatactactgcttttgtatataatttaatattggaagtg |
270 |
Q |
| |
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||| | |||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
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| T |
7247303 |
cctcatcattgctttggtaccattgttttatgatatatactactgcttttgtatataatttaatattggaagtg |
7247230 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 17 - 270
Target Start/End: Complemental strand, 36105968 - 36105729
Alignment:
| Q |
17 |
aggaaaatgctgaaatacacggcaatttttgtcgtgtaatttgcacgaacaagtttttaactacgatttactannnnnnnn-aatttggattcaacagaa |
115 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||| || ||||| |||||||||||| |
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| T |
36105968 |
aggaaaatgttgaaatacacgacaatttttgtcgtgtaatttgcacaaacaaatttttaactacgatttattattattttttaatttagattcaacagaa |
36105869 |
T |
|
| Q |
116 |
aatgacaaatcttgcatgtgctgtatatttcttatgagaaatcatacaaacatctcatttggtggtctatatatgtgtcttaccttactattgctttggt |
215 |
Q |
| |
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||||||||||||| || |||||||||| |||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
36105868 |
aatgacaaatctt----------------tcctatgagaaattatacaaacatcttattcggtggtctatatatgtgccttaccttactattgctttggt |
36105785 |
T |
|
| Q |
216 |
aaca-nnnnnnnnaatatatactactgcttttgtatataatttaatattggaagtg |
270 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||| ||||| |
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|
| T |
36105784 |
aacattattttttaatatataccactgcttttgtatataatttaatattgaaagtg |
36105729 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0471 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0471
Description:
Target: scaffold0471; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 270
Target Start/End: Complemental strand, 4086 - 3846
Alignment:
| Q |
17 |
aggaaaatgctgaaatacacggcaatttttgtcgtgtaatttgcacgaacaagtttttaactacgatttactannnnnnnn--aatttggattcaacaga |
114 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||| || ||||| ||||||||||| |
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| T |
4086 |
aggaaaatgttgaaatacacgacaatttttgtcgtgtaatttgcacaaacaaatttttaactacgatttattattatttttttaatttagattcaacaga |
3987 |
T |
|
| Q |
115 |
aaatgacaaatcttgcatgtgctgtatatttcttatgagaaatcatacaaacatctcatttggtggtctatatatgtgtcttaccttactattgctttgg |
214 |
Q |
| |
|
|||||||||||||| || |||||||||| |||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
3986 |
aaatgacaaatctt----------------tcctatgagaaattatacaaacatcttattcggtggtctatatatgtgccttaccttactattgctttgg |
3903 |
T |
|
| Q |
215 |
taaca-nnnnnnnnaatatatactactgcttttgtatataatttaatattggaagtg |
270 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||||||||||| ||||| |
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|
| T |
3902 |
taacattattttttaatatataccactgcttttgtatataatttaatattgaaagtg |
3846 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 98 - 270
Target Start/End: Original strand, 43681994 - 43682157
Alignment:
| Q |
98 |
aatttggattcaacagaaaatgacaaatcttgcatgtgctgtatatttcttatgagaaatcatacaaacatctcatttggtggtctatatatgtgtctta |
197 |
Q |
| |
|
||||||||||||| |||||||||||||| |||| ||||||||| ||| ||||||| |||||||||||| ||||||||| |||||||||||| |
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|
| T |
43681994 |
aatttggattcaatagaaaatgacaaattttgcttgtgctgtaaatt----------aatcataaaaacatctcattcggtggtctaaatatgtgtctta |
43682083 |
T |
|
| Q |
198 |
ccttactattgctttggtaacannnnnnnna-atatatactactgcttttgtatataatttaatattggaagtg |
270 |
Q |
| |
|
||| | |||||||||||| || |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43682084 |
cctcatcattgctttggtaccattgttttatgatatatactactgcttttgtatataatttaatattggaagtg |
43682157 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 200
Target Start/End: Original strand, 12308166 - 12308258
Alignment:
| Q |
98 |
aatttggattcaacagaaaatgacaaatcttgcatgtgctgtatatttcttatgagaaatcatacaaacatctcatttggtggtctatatatgtgtctta |
197 |
Q |
| |
|
||||||||||||| |||||||||||||| |||| ||||||||| ||| ||||||| |||||||||||| ||||||||| |||||||||||| |
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| T |
12308166 |
aatttggattcaatagaaaatgacaaattttgcttgtgctgtaaatt----------aatcataaaaacatctcattcggtggtctaaatatgtgtctta |
12308255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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