View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18195_low_43 (Length: 282)
Name: NF18195_low_43
Description: NF18195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18195_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 47 - 272
Target Start/End: Original strand, 7140410 - 7140635
Alignment:
| Q |
47 |
ttacctctcattggtaacttacatcaactagcatttgcaggaaaacttccacatcatggtctccaaaaactttctcaaaaatatggacctttaatgcacc |
146 |
Q |
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| T |
7140410 |
ttacctctcattggtaacttacatcaactagcatttgcaggaaaacttccacatcatgggcttcaaaaactttctcaaaaatatggaccattaatgcacc |
7140509 |
T |
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| Q |
147 |
taaaactaggtgaaattaatgcagtggttgtttcttcctcaaatttagccaaggaagtaatgaaaacacatgatgttgtttttgctaataggccaaaact |
246 |
Q |
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| T |
7140510 |
tacaactaggtgaaattaatgcagtggttgtttcttcctcaaatttagccaaggaagtaatgaaaacacatgatgttgtttttgctaataggccaaaact |
7140609 |
T |
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| Q |
247 |
tccttctcttaaaattttagcctatg |
272 |
Q |
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| T |
7140610 |
tccttctcttaaaattttagcctatg |
7140635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 88 - 248
Target Start/End: Original strand, 7152282 - 7152442
Alignment:
| Q |
88 |
aaaacttccacatcatggtctccaaaaactttctcaaaaatatggacctttaatgcacctaaaactaggtgaaattaatgcagtggttgtttcttcctca |
187 |
Q |
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| T |
7152282 |
aaaacgtccacatcatgctctacatgaactttctcataaatatggacctttaatgcacatacaacttggtgaaatttctactgtgattgtatcatctcct |
7152381 |
T |
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| Q |
188 |
aatttagccaaggaagtaatgaaaacacatgatgttgtttttgctaataggccaaaacttc |
248 |
Q |
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| T |
7152382 |
aaattggcaaaggaaataatgaaaacacatgatgctgcttttgctaataggccaaaacttc |
7152442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 156
Target Start/End: Complemental strand, 31185565 - 31185532
Alignment:
| Q |
123 |
aaaaatatggacctttaatgcacctaaaactagg |
156 |
Q |
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| T |
31185565 |
aaaaatatggacccttaatgcacctaaaactagg |
31185532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 99
Target Start/End: Complemental strand, 12426857 - 12426820
Alignment:
| Q |
62 |
aacttacatcaactagcatttgcaggaaaacttccaca |
99 |
Q |
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| T |
12426857 |
aacttgcatcaactagcattagcaggaaaacttccaca |
12426820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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