View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18195_low_44 (Length: 275)
Name: NF18195_low_44
Description: NF18195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18195_low_44 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 15 - 275
Target Start/End: Original strand, 14742649 - 14742909
Alignment:
| Q |
15 |
cataggactactgttttgtatagaaaggatggtgagtgatttagaagaacaaactactattgatcttcgacttgaacatgtcaagttgcaacaaaaccag |
114 |
Q |
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| T |
14742649 |
cataggtctactgttttgtatagaaaggatggtgagtgatttagaagaacaaactactattgatcttcgacttgaacatgtcaagttgcaacaaaaccag |
14742748 |
T |
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| Q |
115 |
tacattacatggcatgggctgcatagccgctcagccacacttcggtgctataaaccactattcaaaatactcgaataaccaaaattaagccaattcaaac |
214 |
Q |
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| T |
14742749 |
tacattacatggcatgggctgcatagccactcagccacacttcggtgctataaaccactattcaaaatactcgaataaccaaaattaagccaattcaaac |
14742848 |
T |
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| Q |
215 |
gtcaacaactgtctttgctttgtctcaactctcacgtttatgcataccatttgatgtgatt |
275 |
Q |
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| T |
14742849 |
ctcaacaactgtctttgctttgtctcaactctcacgtttatgcataccatttgatgtgatt |
14742909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 119 - 241
Target Start/End: Original strand, 14745695 - 14745817
Alignment:
| Q |
119 |
ttacatggcatgggctgcatagccgctcagccacacttcggtgctataaaccactattcaaaatactcgaataaccaaaattaagccaattcaaacgtca |
218 |
Q |
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| T |
14745695 |
ttacatggcatgagctacatagccgctcagccacacttcggtgctataaaccactattcaaaacactcgaataaccaaaattaagccaattaacacctca |
14745794 |
T |
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| Q |
219 |
acaactgtctttgctttgtctca |
241 |
Q |
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| T |
14745795 |
acaaccgtctttgatttggctca |
14745817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 22 - 113
Target Start/End: Original strand, 14745351 - 14745442
Alignment:
| Q |
22 |
ctactgttttgtatagaaaggatggtgagtgatttagaagaacaaactactattgatcttcgacttgaacatgtcaagttgcaacaaaacca |
113 |
Q |
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| T |
14745351 |
ctactgttttgtatagaaaggatggcgactgatttagaagaacaaactactattgatcttcgacttgaacatttcaagttgcaacaaaacca |
14745442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 30 - 156
Target Start/End: Complemental strand, 14282320 - 14282194
Alignment:
| Q |
30 |
ttgtatagaaaggatggtgagtgatttagaagaacaaactactattgatcttcgacttgaacatgtcaagttgcaacaaaaccagtacattacatggcat |
129 |
Q |
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| T |
14282320 |
ttgtatagagaggatggtgagtgatccaaaagaacaaaatattattgatcttgaacttgaacatttcaggttgcaaccaaaccagtacattacatggcat |
14282221 |
T |
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| Q |
130 |
gggctgcatagccgctcagccacactt |
156 |
Q |
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| T |
14282220 |
tggtcgcatagccactcaaccacactt |
14282194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 35 - 110
Target Start/End: Original strand, 22834298 - 22834373
Alignment:
| Q |
35 |
tagaaaggatggtgagtgatttagaagaacaaactactattgatcttcgacttgaacatgtcaagttgcaacaaaa |
110 |
Q |
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| T |
22834298 |
tagaaaggatggtgagtgatccagaagaacaaactactattgatcttcaacttgaacatttcaagttgcagcaaaa |
22834373 |
T |
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