View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18195_low_45 (Length: 253)

Name: NF18195_low_45
Description: NF18195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18195_low_45
NF18195_low_45
[»] chr2 (5 HSPs)
chr2 (7-240)||(29894321-29894554)
chr2 (7-240)||(24543091-24543324)
chr2 (7-240)||(36364918-36365151)
chr2 (7-161)||(40287017-40287171)
chr2 (63-138)||(12555415-12555490)
[»] chr1 (16 HSPs)
chr1 (7-240)||(11351597-11351830)
chr1 (7-237)||(6784159-6784389)
chr1 (7-222)||(21515101-21515314)
chr1 (49-240)||(20639468-20639659)
chr1 (7-240)||(32988886-32989121)
chr1 (14-109)||(2536489-2536584)
chr1 (7-140)||(44839857-44839990)
chr1 (36-164)||(51080701-51080829)
chr1 (7-73)||(52823473-52823539)
chr1 (29-109)||(39648379-39648459)
chr1 (41-105)||(5811388-5811452)
chr1 (51-109)||(2114365-2114423)
chr1 (51-109)||(3601265-3601323)
chr1 (50-107)||(26418788-26418845)
chr1 (50-107)||(32108435-32108492)
chr1 (51-109)||(17321884-17321942)
[»] chr3 (15 HSPs)
chr3 (7-240)||(51976638-51976871)
chr3 (7-240)||(36684783-36685016)
chr3 (7-236)||(8705594-8705823)
chr3 (7-236)||(9057481-9057710)
chr3 (7-228)||(45736356-45736577)
chr3 (10-240)||(4978417-4978648)
chr3 (45-189)||(49758956-49759100)
chr3 (80-236)||(26390800-26390956)
chr3 (37-161)||(38998864-38998988)
chr3 (7-104)||(47165345-47165442)
chr3 (7-161)||(37796562-37796716)
chr3 (50-107)||(32073607-32073664)
chr3 (7-74)||(26390564-26390631)
chr3 (62-118)||(20916409-20916465)
chr3 (62-118)||(20925371-20925427)
[»] chr8 (5 HSPs)
chr8 (7-240)||(18481111-18481344)
chr8 (7-140)||(26440784-26440917)
chr8 (37-238)||(32536156-32536357)
chr8 (7-109)||(7251115-7251217)
chr8 (38-107)||(11911395-11911464)
[»] chr4 (10 HSPs)
chr4 (7-240)||(43989258-43989490)
chr4 (7-188)||(19315890-19316071)
chr4 (7-103)||(43813171-43813267)
chr4 (12-109)||(1394134-1394232)
chr4 (67-109)||(17283581-17283623)
chr4 (50-107)||(13200849-13200906)
chr4 (50-107)||(47783000-47783057)
chr4 (65-109)||(9633067-9633111)
chr4 (51-109)||(35096917-35096975)
chr4 (61-109)||(1479285-1479333)
[»] chr6 (5 HSPs)
chr6 (7-240)||(942571-942804)
chr6 (7-109)||(4513081-4513183)
chr6 (36-107)||(19047098-19047169)
chr6 (9-107)||(13757503-13757601)
chr6 (50-107)||(15950809-15950866)
[»] chr5 (11 HSPs)
chr5 (7-203)||(41197356-41197552)
chr5 (7-229)||(36779403-36779622)
chr5 (7-137)||(30376427-30376557)
chr5 (8-164)||(34905529-34905685)
chr5 (7-59)||(12378608-12378660)
chr5 (37-153)||(14856952-14857068)
chr5 (7-109)||(12714847-12714949)
chr5 (7-109)||(12776078-12776180)
chr5 (16-109)||(29985437-29985530)
chr5 (7-68)||(39714874-39714935)
chr5 (61-109)||(34530-34578)
[»] chr7 (11 HSPs)
chr7 (7-240)||(23820401-23820634)
chr7 (7-236)||(24808771-24808980)
chr7 (7-140)||(21118373-21118505)
chr7 (5-109)||(40901803-40901907)
chr7 (51-107)||(10325110-10325166)
chr7 (61-109)||(12980739-12980787)
chr7 (51-110)||(20492488-20492547)
chr7 (50-107)||(29526837-29526894)
chr7 (53-107)||(8321192-8321246)
chr7 (50-107)||(21588151-21588208)
chr7 (55-135)||(42029863-42029943)
[»] scaffold0041 (1 HSPs)
scaffold0041 (5-109)||(48111-48215)


Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 7 - 240
Target Start/End: Original strand, 29894321 - 29894554
Alignment:
Q  7 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 106  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29894321 acatcatcataaacgtgggagctagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagt 29894420  T
Q  107 tctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 206  Q
    |||  ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29894421 tctgaaaattacaatcgaacaactgtctacaagcctgaataatacaatctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 29894520  T
Q  207 gcaatccaaaacaaaatcaacattgtcataatga 240  Q
    ||||||||||||||||||||||||||||||||||    
T  29894521 gcaatccaaaacaaaatcaacattgtcataatga 29894554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 7 - 240
Target Start/End: Complemental strand, 24543324 - 24543091
Alignment:
Q  7 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 106  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  24543324 acatcatcataaacgtgggagctagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcatcctattgaactcgacatgagagt 24543225  T
Q  107 tctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 206  Q
    |||  ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24543224 tctgaaaattacaatcgaacaactatctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 24543125  T
Q  207 gcaatccaaaacaaaatcaacattgtcataatga 240  Q
    ||||||||||||||||||||||||||||||||||    
T  24543124 gcaatccaaaacaaaatcaacattgtcataatga 24543091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 7 - 240
Target Start/End: Complemental strand, 36365151 - 36364918
Alignment:
Q  7 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 106  Q
    |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||    
T  36365151 acatcaccataaacgtgggagctagcatgagatggggctaccctagctaattcatgagcgacctcattggcttgcctcctattgaactcgacatgggagt 36365052  T
Q  107 tctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 206  Q
    |||  |||  ||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  36365051 tctgaaaatgacaatcgaacaactgcctacaagtatgaataatacaacctagttcactgctatcacctaggtttgaattaaaacgttcaacaacagactt 36364952  T
Q  207 gcaatccaaaacaaaatcaacattgtcataatga 240  Q
    | ||||||||||||||||||||||||||||||||    
T  36364951 ggaatccaaaacaaaatcaacattgtcataatga 36364918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 161
Target Start/End: Original strand, 40287017 - 40287171
Alignment:
Q  7 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 106  Q
    ||||||||||||| |  || | ||| || ||||||||||||||| ||||||||||||| ||||||||| | ||||||| |||| |||| |||||||||||    
T  40287017 acatcatcataaatggtggggctaggatcagatggggctaccctcgctaattcatgagtgaccccattagcttgcctcatattaaacttgacatgagagt 40287116  T
Q  107 tctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttc 161  Q
    | |  ||||||   |  |||||||||||||| ||   |||||||||||| |||||    
T  40287117 tttgaaaactatcctgaaacaactgtctacatgcagtaataatacaaccaagttc 40287171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 138
Target Start/End: Original strand, 12555415 - 12555490
Alignment:
Q  63 agcgaccccattggtttgcctcctattgaactcgacatgagagttctagaaactacaatcgaacaactgtctacaa 138  Q
    ||||||||||||   ||||||||||||||||| ||||||||||||||  |||||   ||  |||||||||||||||    
T  12555415 agcgaccccattaacttgcctcctattgaacttgacatgagagttctgaaaactgttatgtaacaactgtctacaa 12555490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 7 - 240
Target Start/End: Original strand, 11351597 - 11351830
Alignment:
Q  7 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 106  Q
    |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  11351597 acatcatcataaacgtggaagctagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagt 11351696  T
Q  107 tctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 206  Q
    |||  ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11351697 tctgaaaattacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 11351796  T
Q  207 gcaatccaaaacaaaatcaacattgtcataatga 240  Q
    ||||||||||||||||||||||||||||||||||    
T  11351797 gcaatccaaaacaaaatcaacattgtcataatga 11351830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 7 - 237
Target Start/End: Complemental strand, 6784389 - 6784159
Alignment:
Q  7 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 106  Q
    |||| ||||||||||||| || ||| ||||||||| |||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  6784389 acattatcataaacgtggaagctagtatgagatggagctaccctagttaattcataagcgaccccattggcttgcctcctattgaactcgacatgagagt 6784290  T
Q  107 tctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 206  Q
    |||  |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||    
T  6784289 tctgaaaataacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttaaattaaaacgttcaacaagagactt 6784190  T
Q  207 gcaatccaaaacaaaatcaacattgtcataa 237  Q
    |||||||||||||||||||||||||||||||    
T  6784189 gcaatccaaaacaaaatcaacattgtcataa 6784159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 7 - 222
Target Start/End: Complemental strand, 21515314 - 21515101
Alignment:
Q  7 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 106  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  ||||    
T  21515314 acatcatcataaacgtgggagctagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacat--gagt 21515217  T
Q  107 tctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 206  Q
    |||  ||| |||| ||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  21515216 tctgaaaattacattcgaacaactgcctacaaacctgaaaaatacaacctagttcactgctatcacctaggtttgaattaaaacgttcaacaacagactt 21515117  T
Q  207 gcaatccaaaacaaaa 222  Q
    ||||||||||||||||    
T  21515116 gcaatccaaaacaaaa 21515101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 49 - 240
Target Start/End: Complemental strand, 20639659 - 20639468
Alignment:
Q  49 ctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttctagaaactacaatcgaacaactgtctacaagcctgaataa 148  Q
    |||||||||||||||| |||| |||||| |||||||||||||||||| |||||||||||||  ||| |||||||||||||||| ||||||||||||||||    
T  20639659 ctagctaattcatgagtgacctcattggcttgcctcctattgaactcaacatgagagttctgaaaattacaatcgaacaactgcctacaagcctgaataa 20639560  T
Q  149 tacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcataatga 240  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  20639559 tacaacctagttcactactatcacctaggtttgaattaaaatgttcaacaacaaacttggaatccaaaacaaaatcaacattgtcataatga 20639468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 7 - 240
Target Start/End: Original strand, 32988886 - 32989121
Alignment:
Q  7 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattga----actcgacatga 102  Q
    ||||||||||||||| || || ||||||||||||||||||||||| |||||||||||||||    ||||| |||||||||||  |    |||||||||||    
T  32988886 acatcatcataaacgcggaagctagcatgagatggggctaccctaactaattcatgagcgaaa--attggcttgcctcctatatatataactcgacatga 32988983  T
Q  103 gagttctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacag 202  Q
    |||||||  ||  |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| || |||| |||||||| |||||||||||     
T  32988984 gagttctgaaagttacaatcgaacaactgcctacaagtctgaataatacaacctagttcactgctatcacgtaagtttaaattaaaacgttcaacaacat 32989083  T
Q  203 acttgcaatccaaaacaaaatcaacattgtcataatga 240  Q
    ||||| ||||| |||||||||| |||| ||||||||||    
T  32989084 acttggaatccgaaacaaaatccacatcgtcataatga 32989121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 109
Target Start/End: Original strand, 2536489 - 2536584
Alignment:
Q  14 cataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 109  Q
    ||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2536489 cataaacatgggagctagcatgagatggggctaccctaactaattcatgagcgaccccattggcttgcctcctattgaactcgacatgagagttct 2536584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 7 - 140
Target Start/End: Original strand, 44839857 - 44839990
Alignment:
Q  7 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 106  Q
    |||| ||||||||||| |||| |||||| ||||||||||||||||||||| |||||||||||||||||   |||||||||||||||||||||||||||||    
T  44839857 acattatcataaacgtaggagctagcattagatggggctaccctagctaactcatgagcgaccccattaacttgcctcctattgaactcgacatgagagt 44839956  T
Q  107 tctagaaactacaatcgaacaactgtctacaagc 140  Q
    |||  ||||||   || ||||| |||||||||||    
T  44839957 tctgaaaactattgtcaaacaattgtctacaagc 44839990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 36 - 164
Target Start/End: Original strand, 51080701 - 51080829
Alignment:
Q  36 agatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttctagaaactacaatcgaacaactgtcta 135  Q
    ||||||||||||||| ||||||||||||||||||||||| | |||||||||||| ||||||||||||||||| |  ||||||   |  ||||||||||||    
T  51080701 agatggggctaccctcgctaattcatgagcgaccccattagattgcctcctattaaactcgacatgagagttttgaaaactatcctgaaacaactgtcta 51080800  T
Q  136 caagcctgaataatacaacctagttcact 164  Q
    || ||   |||||||||||| ||||||||    
T  51080801 catgcagtaataatacaaccaagttcact 51080829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 52823473 - 52823539
Alignment:
Q  7 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccat 73  Q
    |||||||| ||||| | |||||||| ||||||||| ||||||||| |||||||||||||||||||||    
T  52823473 acatcatcgtaaacataggagttagtatgagatggagctaccctaactaattcatgagcgaccccat 52823539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 109
Target Start/End: Original strand, 39648379 - 39648459
Alignment:
Q  29 tagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 109  Q
    ||||||||||||||||||||  |||||||||||||||||||  ||| | ||| || ||||| ||||||||| |||||||||    
T  39648379 tagcatgagatggggctacctgagctaattcatgagcgacctaattagcttgacttctattaaactcgacacgagagttct 39648459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 5811452 - 5811388
Alignment:
Q  41 gggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagag 105  Q
    ||||| || ||||||||| |||||| |||||||| ||||| |||||||| |||||||||||||||    
T  5811452 gggctgccttagctaattaatgagctaccccatttgtttgtctcctattaaactcgacatgagag 5811388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 2114423 - 2114365
Alignment:
Q  51 agctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 109  Q
    ||||||||| |||||||||||||| | || | |||| ||||||||||||||||||||||    
T  2114423 agctaattcgtgagcgaccccattcgcttccttcctgttgaactcgacatgagagttct 2114365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 3601265 - 3601323
Alignment:
Q  51 agctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 109  Q
    |||||| || ||||| ||| |||| | ||||||||||||||||||||||||||||||||    
T  3601265 agctaactcgtgagcaacctcattcgcttgcctcctattgaactcgacatgagagttct 3601323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 26418788 - 26418845
Alignment:
Q  50 tagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagtt 107  Q
    |||||||||||||||| ||| |||| | |||||||||| | |||||||||||||||||    
T  26418788 tagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtt 26418845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 32108492 - 32108435
Alignment:
Q  50 tagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagtt 107  Q
    |||||||||||||||| ||| |||| | |||||||||| | |||||||||||||||||    
T  32108492 tagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtt 32108435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 17321942 - 17321884
Alignment:
Q  51 agctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 109  Q
    |||||| || ||||| |||| ||| | ||||||||| ||||||||||||||||||||||    
T  17321942 agctaactcgtgagctaccctatttgcttgcctcctgttgaactcgacatgagagttct 17321884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 7 - 240
Target Start/End: Complemental strand, 51976871 - 51976638
Alignment:
Q  7 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 106  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  51976871 acatcatcataaacgtgggagctagcatgagatggagctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcggcatgagagt 51976772  T
Q  107 tctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 206  Q
    |||  ||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51976771 tctgaaaattacaatcaaacaactttctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 51976672  T
Q  207 gcaatccaaaacaaaatcaacattgtcataatga 240  Q
    ||||||||||||||||||||||||||||||||||    
T  51976671 gcaatccaaaacaaaatcaacattgtcataatga 51976638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 7 - 240
Target Start/End: Complemental strand, 36685016 - 36684783
Alignment:
Q  7 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 106  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  36685016 acatcatcataaacgtgagagctagcatgagatggggctaccctagctaattcatgagcgaccccattagcttgcctcctattgaactcgacatgagagt 36684917  T
Q  107 tctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 206  Q
    |||  ||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  36684916 tctgaaaattacaatcgaacaactgtctacaagcctgaatgatacaacctagttcactactatcacctaggtttgaattaaaatgttcaacaacaaactt 36684817  T
Q  207 gcaatccaaaacaaaatcaacattgtcataatga 240  Q
    ||||||||||||||||||||||||||||||||||    
T  36684816 gcaatccaaaacaaaatcaacattgtcataatga 36684783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 7 - 236
Target Start/End: Complemental strand, 8705823 - 8705594
Alignment:
Q  7 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 106  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||| ||||||| |||| | |||||||||||||||||||||||||||||    
T  8705823 acatcatcataaacgtgggagctagtatgagatggggctaccctaactaattcataagcgacctcattagcttgcctcctattgaactcgacatgagagt 8705724  T
Q  107 tctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 206  Q
    |||  ||| ||||||| |||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||| ||||    
T  8705723 tctgaaaattacaatcaaacaactgcctacaagcctgaataatacaacctagttcactactatcaactaggtttgaattaaaacgttcaacaacatactt 8705624  T
Q  207 gcaatccaaaacaaaatcaacattgtcata 236  Q
    | ||||||||||||||||||||| ||||||    
T  8705623 ggaatccaaaacaaaatcaacatggtcata 8705594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 7 - 236
Target Start/End: Complemental strand, 9057710 - 9057481
Alignment:
Q  7 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 106  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||| ||||||| |||| | |||||||||||||||||||||||||||||    
T  9057710 acatcatcataaacgtgggagctagtatgagatggggctaccctaactaattcataagcgacctcattagcttgcctcctattgaactcgacatgagagt 9057611  T
Q  107 tctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 206  Q
    |||  ||| ||||||| |||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||| ||||    
T  9057610 tctgaaaattacaatcaaacaactgcctacaagcctgaataatacaacctagttcactactatcaactaggtttgaattaaaacgttcaacaacatactt 9057511  T
Q  207 gcaatccaaaacaaaatcaacattgtcata 236  Q
    | ||||||||||||||||||||| ||||||    
T  9057510 ggaatccaaaacaaaatcaacatggtcata 9057481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 45736577 - 45736356
Alignment:
Q  7 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 106  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||  ||||||||| ||||||||||||||||||||||||||||    
T  45736577 acatcatcataaacgtgggagttagcatgagatgaggctaccctagctaatttacgagcgttcccattggtctgcctcctattgaactcgacatgagagt 45736478  T
Q  107 tctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 206  Q
    |||  ||| ||||||||||||| || |||||| ||| |||||||||||||| ||||||||||||| |||| ||| |||||||| ||| ||||||| ||||    
T  45736477 tctgaaaattacaatcgaacaattgcctacaaacctaaataatacaacctaattcactgctatcatctagatttaaattaaaacgttgaacaacaaactt 45736378  T
Q  207 gcaatccaaaacaaaatcaaca 228  Q
    | ||||||||||||||||||||    
T  45736377 gaaatccaaaacaaaatcaaca 45736356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 10 - 240
Target Start/End: Original strand, 4978417 - 4978648
Alignment:
Q  10 tcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 109  Q
    |||||||||| | | |||||||||||||||| |||||| ||||||||||||||| ||||| |||||| ||| ||| |||| |||||||||||||||||||    
T  4978417 tcatcataaatgcgcgagttagcatgagatgtggctacgctagctaattcatgaacgacctcattggcttgtctcatattaaactcgacatgagagttct 4978516  T
Q  110 agaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttc-aacaacagacttgc 208  Q
      ||| || || ||||||| || ||||||||| |||||||||||||||||| |||  ||||||||||||||||||||||| |||| ||||||| | |||     
T  4978517 gaaaattataaccgaacaagtgcctacaagccagaataatacaacctagtttactattatcacctaggtttgaattaaaacgttcaaacaacatatttgg 4978616  T
Q  209 aatccaaaacaaaatcaacattgtcataatga 240  Q
    ||||||||||||||| |||||||||| |||||    
T  4978617 aatccaaaacaaaattaacattgtcagaatga 4978648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 45 - 189
Target Start/End: Original strand, 49758956 - 49759100
Alignment:
Q  45 taccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttctagaaactacaatcgaacaactgtctacaagcctga 144  Q
    ||||||||  ||||||||||||| |||||| | |||||||||||||||| |||||| ||||||||  ||| ||||| | | |||| | ||||||| ||||    
T  49758956 taccctagtcaattcatgagcgatcccattagcttgcctcctattgaacccgacataagagttctgaaaattacaagcaagcaacagcctacaagtctga 49759055  T
Q  145 ataatacaacctagttcactgctatcacctaggtttgaattaaaa 189  Q
    ||||| |||||||||||||| |||||  |||||||||||||||||    
T  49759056 ataatgcaacctagttcactactatcctctaggtttgaattaaaa 49759100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 80 - 236
Target Start/End: Original strand, 26390800 - 26390956
Alignment:
Q  80 gcctcctattgaactcgacatgagagttctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtt 179  Q
    |||||||||||||||||||| ||||||| || ||||||||| | ||||||||||||||||| || ||||| |||||||||||||| |||||  |||||||    
T  26390800 gcctcctattgaactcgacacgagagttataaaaactacaagcaaacaactgtctacaagcttgtataatgcaacctagttcactactatcttctaggtt 26390899  T
Q  180 tgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcata 236  Q
    | | |||||| | || ||||  | |||| |||||||| |||| || ||||| |||||    
T  26390900 tcagttaaaacgatctacaagtgccttgaaatccaaagcaaagtcgacattatcata 26390956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 37 - 161
Target Start/End: Complemental strand, 38998988 - 38998864
Alignment:
Q  37 gatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttctagaaactacaatcgaacaactgtctac 136  Q
    |||||||||||||| |||||||| |||||||||||||| | |||||||||||| ||||||||||||||||| |  ||||||   |  |||||||||||||    
T  38998988 gatggggctaccctcgctaattcgtgagcgaccccattagcttgcctcctattaaactcgacatgagagttttgaaaactatcctgaaacaactgtctac 38998889  T
Q  137 aagcctgaataatacaacctagttc 161  Q
    | |||  |||||||||||| |||||    
T  38998888 aggccgtaataatacaaccaagttc 38998864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 104
Target Start/End: Original strand, 47165345 - 47165442
Alignment:
Q  7 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgaga 104  Q
    |||||| | |||||||||||| ||||||||||||||||| || |  |||||||| ||||||||||||||  ||||||||||||||||||||| |||||    
T  47165345 acatcaccgtaaacgtgggagctagcatgagatggggctgcctttcctaattcacgagcgaccccattgacttgcctcctattgaactcgacgtgaga 47165442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 7 - 161
Target Start/End: Complemental strand, 37796716 - 37796562
Alignment:
Q  7 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 106  Q
    ||||||||||||| |  || | ||| || ||||||||||||||| |||||||  ||||||||| |||| | |||||||||||| ||||||||||||| ||    
T  37796716 acatcatcataaatggtggggctaggatcagatggggctaccctcgctaatttgtgagcgacctcattagcttgcctcctattaaactcgacatgagtgt 37796617  T
Q  107 tctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttc 161  Q
    | |  ||||||   |  |||||||||||||| |||  |||||||||||| |||||    
T  37796616 tttgaaaactatcctgaaacaactgtctacaggccgtaataatacaaccaagttc 37796562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 32073607 - 32073664
Alignment:
Q  50 tagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagtt 107  Q
    |||||||||||||||| ||| |||| | |||||||||| | |||||||||||||||||    
T  32073607 tagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtt 32073664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 26390564 - 26390631
Alignment:
Q  7 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccatt 74  Q
    |||| |||||||||||| |||||||||||||| ||| ||||    |||||||||||||||| ||||||    
T  26390564 acattatcataaacgtgagagttagcatgagacgggactacatgtgctaattcatgagcgatcccatt 26390631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 118
Target Start/End: Complemental strand, 20916465 - 20916409
Alignment:
Q  62 gagcgaccccattggtttgcctcctattgaactcgacatgagagttctagaaactac 118  Q
    |||||||| |||| | |||||||||||||||||| |||| ||||||||  |||||||    
T  20916465 gagcgacctcattcgcttgcctcctattgaactcaacataagagttctgaaaactac 20916409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 118
Target Start/End: Complemental strand, 20925427 - 20925371
Alignment:
Q  62 gagcgaccccattggtttgcctcctattgaactcgacatgagagttctagaaactac 118  Q
    |||||||| |||| | |||||||||||||||||| |||| ||||||||  |||||||    
T  20925427 gagcgacctcattcgcttgcctcctattgaactcaacataagagttctgaaaactac 20925371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 7 - 240
Target Start/End: Complemental strand, 18481344 - 18481111
Alignment:
Q  7 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 106  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||  || ||||||||||||||||||||||||||    
T  18481344 acatcatcataaacgtgggagctagcatgagatggggctaccctagctaatttatgagtgaccccattgacttacctcctattgaactcgacatgagagt 18481245  T
Q  107 tctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 206  Q
    |||  ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18481244 tctgaaaattacaatcgaacaactatctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 18481145  T
Q  207 gcaatccaaaacaaaatcaacattgtcataatga 240  Q
    ||||||||||||||||||||||||||||||||||    
T  18481144 gcaatccaaaacaaaatcaacattgtcataatga 18481111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 7 - 140
Target Start/End: Complemental strand, 26440917 - 26440784
Alignment:
Q  7 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 106  Q
    |||| ||||||| |||| ||| |||||| ||||||||||||||||||||| |||||||| |||||||| | |||||||||||||||||||||||||||||    
T  26440917 acattatcataatcgtgagagctagcattagatggggctaccctagctaactcatgagcaaccccattagcttgcctcctattgaactcgacatgagagt 26440818  T
Q  107 tctagaaactacaatcgaacaactgtctacaagc 140  Q
    |||| ||||||   || |||||||||||||||||    
T  26440817 tctaaaaactattgtcaaacaactgtctacaagc 26440784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 37 - 238
Target Start/End: Original strand, 32536156 - 32536357
Alignment:
Q  37 gatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttctagaaactacaatcgaacaactgtctac 136  Q
    |||||||||||||||||||||||| |||||||||||||   |||  | | |||||||||||||| |||||||   ||| ||||| | | ||| ||| |||    
T  32536156 gatggggctaccctagctaattcacgagcgaccccattaacttgttttcaattgaactcgacataagagttcataaaattacaagcaatcaattgtttac 32536255  T
Q  137 aagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagacttgcaatccaaaacaaaatcaacattgtcata 236  Q
    ||||||||||||||||||||||||||||  ||||  |||||||||||| |||  | || |||| | ||||| |||||||| ||||||| ||||  |||||    
T  32536256 aagcctgaataatacaacctagttcactattatcgtctaggtttgaatgaaagcgatctacaataaacttgtaatccaaagcaaaatcgacatgatcata 32536355  T
Q  237 at 238  Q
    ||    
T  32536356 at 32536357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 7 - 109
Target Start/End: Complemental strand, 7251217 - 7251115
Alignment:
Q  7 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 106  Q
    |||| ||||||| | ||| || |||||||||||||||||||| ||| |||| |||||| || |||||||||||||||||||||||||||||||| |||||    
T  7251217 acattatcataatcatggaagctagcatgagatggggctaccttagttaatgcatgagtgatcccattggtttgcctcctattgaactcgacataagagt 7251118  T
Q  107 tct 109  Q
    |||    
T  7251117 tct 7251115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 107
Target Start/End: Original strand, 11911395 - 11911464
Alignment:
Q  38 atggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagtt 107  Q
    |||||||| ||| |||||| || || | ||||||||| |||| |||||||||||||||||||||||||||    
T  11911395 atggggcttcccgagctaactcgtgggggaccccattcgtttacctcctattgaactcgacatgagagtt 11911464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 7 - 240
Target Start/End: Original strand, 43989258 - 43989490
Alignment:
Q  7 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 106  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||| ||    
T  43989258 acatcatcataaacgtgggagctagcatgagatggggctaccctaactaattcatgagcgacctcattggcttgcctcctattgaactcgacatgagcgt 43989357  T
Q  107 tctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 206  Q
    |||| ||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  43989358 tctaaaaa-tacaatcgaacaattgtctgcaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaacgttcaacaacaaactt 43989456  T
Q  207 gcaatccaaaacaaaatcaacattgtcataatga 240  Q
    ||||||||||||||||||||||||||||||||||    
T  43989457 gcaatccaaaacaaaatcaacattgtcataatga 43989490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 7 - 188
Target Start/End: Original strand, 19315890 - 19316071
Alignment:
Q  7 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 106  Q
    |||| ||||||| |||||||| || ||| || ||||||||||   |||||||||||| |||| ||||||| |||||||||||||||||||||||||||||    
T  19315890 acataatcataagcgtgggagctaccataaggtggggctacctgtgctaattcatgaacgactccattggcttgcctcctattgaactcgacatgagagt 19315989  T
Q  107 tctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaa 188  Q
    |||  |||||   | | ||||||| ||||||||| || ||||| |||||||| ||||| |||||| |||  ||||| |||||    
T  19315990 tctgaaaactgttaacaaacaactatctacaagcatgtataatgcaacctagctcactactatcatctacatttgacttaaa 19316071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 103
Target Start/End: Original strand, 43813171 - 43813267
Alignment:
Q  7 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgag 103  Q
    ||||||||| ||||| | ||| ||| ||||||||||||||||||| ||||||||||| |||||||||||  ||| || |||||||||||||||||||    
T  43813171 acatcatcaaaaacgagagagctagtatgagatggggctaccctaactaattcatgaacgaccccattgacttgtctgctattgaactcgacatgag 43813267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 109
Target Start/End: Complemental strand, 1394232 - 1394134
Alignment:
Q  12 atcataaacgtgggagttagcatgagatgggg-ctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 109  Q
    |||||| | ||||||| |||||| |||||||| ||||    |||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||    
T  1394232 atcatagatgtgggagctagcattagatggggactacttgtgctaattcatgaacgaccccattagcttgcctcctattgaactcgacatgagagttct 1394134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 67 - 109
Target Start/End: Original strand, 17283581 - 17283623
Alignment:
Q  67 accccattggtttgcctcctattgaactcgacatgagagttct 109  Q
    |||||||| ||||||||||||||||||||||||| ||||||||    
T  17283581 accccattcgtttgcctcctattgaactcgacataagagttct 17283623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 13200906 - 13200849
Alignment:
Q  50 tagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagtt 107  Q
    ||||||| |||||||| ||| |||| | |||||||||| |||||||||||||||||||    
T  13200906 tagctaactcatgagcaacctcatttgcttgcctcctaatgaactcgacatgagagtt 13200849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 47783057 - 47783000
Alignment:
Q  50 tagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagtt 107  Q
    |||||||||||||||| ||| |||| | |||||||||| | |||||||||||||||||    
T  47783057 tagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtt 47783000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 109
Target Start/End: Complemental strand, 9633111 - 9633067
Alignment:
Q  65 cgaccccattggtttgcctcctattgaactcgacatgagagttct 109  Q
    ||||||||||   ||||||||||||||||||||||||||||||||    
T  9633111 cgaccccattcacttgcctcctattgaactcgacatgagagttct 9633067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 35096975 - 35096917
Alignment:
Q  51 agctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 109  Q
    |||||| || ||||| |||| ||| | |||||| |||||||||||||||||||||||||    
T  35096975 agctaactcgtgagcaaccctatttgcttgccttctattgaactcgacatgagagttct 35096917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 1479285 - 1479333
Alignment:
Q  61 tgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 109  Q
    |||| |||||||||   |||||||||||||||||||| |||||||||||    
T  1479285 tgagtgaccccatttacttgcctcctattgaactcgatatgagagttct 1479333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 174; Significance: 1e-93; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 7 - 240
Target Start/End: Complemental strand, 942804 - 942571
Alignment:
Q  7 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 106  Q
    |||||||| |||||||||||| ||||||||||||||| |  ||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||    
T  942804 acatcatcgtaaacgtgggagatagcatgagatggggttgtcctagctaattcacgagcgaccccattggcttgcctcctattgaactcgacattagagt 942705  T
Q  107 tctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 206  Q
    |||  ||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  942704 tctgaaaattacaatcgaacaactgcctacaagcctgaataatacaacctagttcactactatcacctaggtttgacttaaaatgttcaacaacagactt 942605  T
Q  207 gcaatccaaaacaaaatcaacattgtcataatga 240  Q
    | ||||||||||||||||||||||||||||||||    
T  942604 ggaatccaaaacaaaatcaacattgtcataatga 942571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 7 - 109
Target Start/End: Complemental strand, 4513183 - 4513081
Alignment:
Q  7 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 106  Q
    |||| ||||||||| |||||| ||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||    
T  4513183 acattatcataaacatgggagctagtatgagatggggctaccctagctaattcattagcgaccccattggcttgcctcctattgaactcgacatgagagt 4513084  T
Q  107 tct 109  Q
    |||    
T  4513083 tct 4513081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 107
Target Start/End: Complemental strand, 19047169 - 19047098
Alignment:
Q  36 agatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagtt 107  Q
    |||| |||||||||| |||||||| ||||||||| |||| | |||||||||||| |||||||||||||||||    
T  19047169 agatagggctaccctcgctaattcgtgagcgaccacattagcttgcctcctattaaactcgacatgagagtt 19047098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 13757503 - 13757601
Alignment:
Q  9 atcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagtt 107  Q
    |||||||||||  | |||| ||| || | |||| |||| |||||||||||| ||||||||| |||| |||||| || |||| ||||| |||||||||||    
T  13757503 atcatcataaaaattggagctaggattatatggagctatcctagctaattcgtgagcgacctcattagtttgcttcttattaaactcaacatgagagtt 13757601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 15950866 - 15950809
Alignment:
Q  50 tagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagtt 107  Q
    |||||||||||||||| ||| |||| | |||||||||| | |||||||||||||||||    
T  15950866 tagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtt 15950809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 7 - 203
Target Start/End: Original strand, 41197356 - 41197552
Alignment:
Q  7 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 106  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  41197356 acatcatcataaacgtgggagctagcatgagatggggctaccctagctaattcatgagcgaccccattggcttgcctcctattgaactcgacataagagt 41197455  T
Q  107 tctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacaga 203  Q
    |||  ||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41197456 tctgaaaattacaatcgaacaactgtctataagcctaaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacaga 41197552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 36779403 - 36779622
Alignment:
Q  7 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 106  Q
    ||||||||||| ||||||||| || ||| ||||||| |||||||||||||| |||||| ||| | ||||| ||||||||||||| |||||||||||||||    
T  36779403 acatcatcatagacgtgggagctaacat-agatgggactaccctagctaatccatgagtgacactattggcttgcctcctattgtactcgacatgagagt 36779501  T
Q  107 tctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 206  Q
    |||   || ||||| | |||||||| |||||||||| ||||||||||||||||||||| || |||  |||||||||||||||| ||||||||| ||||||    
T  36779502 tctg--aattacaaccaaacaactgcctacaagccttaataatacaacctagttcactactctcaattaggtttgaattaaaacgttcaacaatagactt 36779599  T
Q  207 gcaatccaaaacaaaatcaacat 229  Q
    | ||||||||| |||||||||||    
T  36779600 ggaatccaaaataaaatcaacat 36779622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 7 - 137
Target Start/End: Original strand, 30376427 - 30376557
Alignment:
Q  7 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 106  Q
    |||||||||||||||| |||| |||||||||||| ||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||    
T  30376427 acatcatcataaacgttggagctagcatgagatgaggctaccgtagctaattcatgagcgaccctattggcttgcctcctattgaactcgacataagagt 30376526  T
Q  107 tctagaaactacaatcgaacaactgtctaca 137  Q
    | |  ||| || ||||||||||||| |||||    
T  30376527 tttgaaaattataatcgaacaactgcctaca 30376557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 8 - 164
Target Start/End: Complemental strand, 34905685 - 34905529
Alignment:
Q  8 catcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagtt 107  Q
    ||||||| ||||| |||||||||||||||||| |||||||    |||||||||||||||||| |||||||||| |||||||||||||| |||  ||||||    
T  34905685 catcatcgtaaacttgggagttagcatgagatcgggctacttgggctaattcatgagcgacctcattggtttgtctcctattgaactcaacacaagagtt 34905586  T
Q  108 ctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcact 164  Q
    ||  ||||||  | | ||||||||||||||||| || |||| ||||||||| |||||    
T  34905585 ctgaaaactattaacaaacaactgtctacaagcatgtataacacaacctagctcact 34905529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 12378608 - 12378660
Alignment:
Q  7 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattc 59  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12378608 acatcatcataaacgtgggagctagcatgagatggggctaccctagctaattc 12378660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 153
Target Start/End: Original strand, 14856952 - 14857068
Alignment:
Q  37 gatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttctagaaactacaatcgaacaactgtctac 136  Q
    ||||||| | || |||||||||||||||||| | |||| ||||||||| |||| ||||||||||||||||| |  || ||   || |||||||||||||     
T  14856952 gatggggatgccttagctaattcatgagcgatcacatttgtttgcctcatattaaactcgacatgagagttttgaaagctttcatggaacaactgtctag 14857051  T
Q  137 aagcctgaataatacaa 153  Q
    |||| | ||||||||||    
T  14857052 aagcattaataatacaa 14857068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 12714847 - 12714949
Alignment:
Q  7 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 106  Q
    |||||||||||||| || ||| ||||||| ||||||| ||||   ||||||| |||| |||||||||| | |||| |||| |||||| | ||||||||||    
T  12714847 acatcatcataaacatgagagctagcatgtgatggggttacctctgctaatttatgaacgaccccattaggttgcttccttttgaacccaacatgagagt 12714946  T
Q  107 tct 109  Q
    |||    
T  12714947 tct 12714949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 109
Target Start/End: Original strand, 12776078 - 12776180
Alignment:
Q  7 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 106  Q
    |||||||||||||| || ||| ||||||| ||||||| ||||   ||||||| |||| |||||||||| | |||| |||| |||||| | ||||||||||    
T  12776078 acatcatcataaacatgagagctagcatgtgatggggttacctctgctaatttatgaacgaccccattaggttgcttccttttgaacccaacatgagagt 12776177  T
Q  107 tct 109  Q
    |||    
T  12776178 tct 12776180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 29985530 - 29985437
Alignment:
Q  16 taaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 109  Q
    |||| ||||||| || |||||  | ||||||||  |||||| || ||| ||||| |||| | ||| || |||||||||||||||||||||||||    
T  29985530 taaatgtgggagctaacatgacctagggctacctgagctaactcgtgaacgacctcattagcttgtcttctattgaactcgacatgagagttct 29985437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 39714935 - 39714874
Alignment:
Q  7 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgac 68  Q
    ||||||||||||||||| ||| ||  || || ||||||||| ||| ||||||||||||||||    
T  39714935 acatcatcataaacgtgagagctaatataaggtggggctacactaactaattcatgagcgac 39714874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 34578 - 34530
Alignment:
Q  61 tgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 109  Q
    |||||||||  ||||| |||| ||||||| |||||||||||||||||||    
T  34578 tgagcgaccatattggcttgcttcctattaaactcgacatgagagttct 34530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 154; Significance: 9e-82; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 7 - 240
Target Start/End: Complemental strand, 23820634 - 23820401
Alignment:
Q  7 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 106  Q
    ||||||||||||| ||||||| |||||||||||||  |||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  23820634 acatcatcataaatgtgggagctagcatgagatggatctaccctatctaattcatgagcgaccccattggcttgcctcctattgaactcgatatgagagt 23820535  T
Q  107 tctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 206  Q
    |||  ||| ||||||| |||||||| |||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||    
T  23820534 tctgaaaattacaatcaaacaactgcctacaaacctgaatgatacaacctagttcactactatcacctaggtttgaattaaagtgtacaacaacagactt 23820435  T
Q  207 gcaatccaaaacaaaatcaacattgtcataatga 240  Q
    | ||||||||||||||| ||||| ||||||||||    
T  23820434 ggaatccaaaacaaaattaacatggtcataatga 23820401  T

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Target: chr7; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 7 - 236
Target Start/End: Original strand, 24808771 - 24808980
Alignment:
Q  7 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 106  Q
    ||||||||||||||||||    |||||||||||||||||| ||||||||||||||||| | ||||||||| ||||||||||||||||| |        ||    
T  24808771 acatcatcataaacgtggc---tagcatgagatggggctatcctagctaattcatgagtggccccattggcttgcctcctattgaactag--------gt 24808859  T
Q  107 tctagaaactacaatcgaacaactgtctacaagcctgaataatacaacctagttcactgctatcacctaggtttgaattaaaatgttcaacaacagactt 206  Q
    |         |||| | |||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| | ||||||||||||||    
T  24808860 t---------acaaccaaacaactgcctacaagcctgaataatacaacctagttcactactatcaactaggtttgaattaaaacgatcaacaacagactt 24808950  T
Q  207 gcaatccaaaacaaaatcaacattgtcata 236  Q
    | |||| |||||||||||||||| ||||||    
T  24808951 ggaatctaaaacaaaatcaacatggtcata 24808980  T

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Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 140
Target Start/End: Complemental strand, 21118505 - 21118373
Alignment:
Q  7 acatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagt 106  Q
    |||| ||||||||||| |||| |||||  |||||| ||||||||||||||  |||||| |||| |||| | |||||||||||||||||||||||||||||    
T  21118505 acattatcataaacgttggagctagcaatagatggtgctaccctagctaac-catgagtgacctcattagcttgcctcctattgaactcgacatgagagt 21118407  T
Q  107 tctagaaactacaatcgaacaactgtctacaagc 140  Q
    |||  ||||||   || |||||||||||||||||    
T  21118406 tctgaaaactattgtcaaacaactgtctacaagc 21118373  T

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Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 109
Target Start/End: Original strand, 40901803 - 40901907
Alignment:
Q  5 ggacatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgaga 104  Q
    ||||||||||||| |  |||||| ||||||||||||| ||||||   | ||||||||||||||||  ||| |||||||||||||| ||||||||||||||    
T  40901803 ggacatcatcatagatatgggagctagcatgagatggagctacctgtgttaattcatgagcgaccatattagtttgcctcctattcaactcgacatgaga 40901902  T
Q  105 gttct 109  Q
    |||||    
T  40901903 gttct 40901907  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 107
Target Start/End: Original strand, 10325110 - 10325166
Alignment:
Q  51 agctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagtt 107  Q
    |||||| |||||||||||| |||| |||||||||||||| |||||||||||||||||    
T  10325110 agctaactcatgagcgacctcattcgtttgcctcctattaaactcgacatgagagtt 10325166  T

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Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 109
Target Start/End: Complemental strand, 12980787 - 12980739
Alignment:
Q  61 tgagcgaccccattggtttgcctcctattgaactcgacatgagagttct 109  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  12980787 tgagcgaccccattcgtttgcctcctgttgaactcgacatgagagttct 12980739  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 110
Target Start/End: Complemental strand, 20492547 - 20492488
Alignment:
Q  51 agctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttcta 110  Q
    ||||||||| |||||||||| ||| | |||||||||||| ||||||| ||||||||||||    
T  20492547 agctaattcgtgagcgaccctattcgcttgcctcctattaaactcgagatgagagttcta 20492488  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 107
Target Start/End: Complemental strand, 29526894 - 29526837
Alignment:
Q  50 tagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagtt 107  Q
    |||||||||||||||| ||| |||| | |||||||||| | |||||||||||||||||    
T  29526894 tagctaattcatgagcaacctcatttgcttgcctcctagtaaactcgacatgagagtt 29526837  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 8321192 - 8321246
Alignment:
Q  53 ctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagtt 107  Q
    ||||||||||||||||||| || ||||| ||| |||| || ||||||||||||||    
T  8321192 ctaattcatgagcgaccccgtttgtttgtctcgtattaaattcgacatgagagtt 8321246  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 21588151 - 21588208
Alignment:
Q  50 tagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagtt 107  Q
    ||||||||||||| || ||| |||| | |||||||||| | |||||||||||||||||    
T  21588151 tagctaattcatgtgcaacctcatttgattgcctcctaataaactcgacatgagagtt 21588208  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 135
Target Start/End: Original strand, 42029863 - 42029943
Alignment:
Q  55 aattcatgagcgaccccattggtttgcctcctattgaactcgacatgagagttctagaaactacaatcgaacaactgtcta 135  Q
    |||||| |||||||||||||  |||||||| |||| || || ||||||||||| | |||||||  || ||||| |||||||    
T  42029863 aattcacgagcgaccccattaatttgcctcatattaaattcaacatgagagtttttgaaactattatggaacatctgtcta 42029943  T

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Target: scaffold0041 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 48215 - 48111
Alignment:
Q  5 ggacatcatcataaacgtgggagttagcatgagatggggctaccctagctaattcatgagcgaccccattggtttgcctcctattgaactcgacatgaga 104  Q
    ||||||||||||| |  |||||| ||||||||||||| ||||||   | ||||||||||||||||  ||| |||||||||||||| ||||||||||||||    
T  48215 ggacatcatcatagatatgggagctagcatgagatggagctacctgtgttaattcatgagcgaccatattagtttgcctcctattcaactcgacatgaga 48116  T
Q  105 gttct 109  Q
    |||||    
T  48115 gttct 48111  T

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