View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18195_low_47 (Length: 250)
Name: NF18195_low_47
Description: NF18195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18195_low_47 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 48740571 - 48740328
Alignment:
| Q |
1 |
ttttattctgatttattacatcaaaatatattctttacccaatttcataaagtctccctagagttgaaattctctctaactttgattctttgatttatta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48740571 |
ttttattctgatttattacatcaaaatatattctttacccaatttcataaagtctccctagagttgaaattctctctaactttgattctttgatttatta |
48740472 |
T |
|
| Q |
101 |
ggggtcacttttattcgtaacgactcatgtcatccgtcataatgacaaactatgaaattagtacttttaattaatatctattcaatcattgttatggtct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48740471 |
ggggtcacttttattcgtaacgactcatgtcatccgtcataatgacaaactatgaaattagtacttttaattaatatctattcaatcattgttatggtct |
48740372 |
T |
|
| Q |
201 |
aatccatcttaaatatctttatcattttaaaccatattcttgga |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
48740371 |
aatccatcttaaatatctttatcattttaaaccattttattgga |
48740328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University