View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18195_low_48 (Length: 250)
Name: NF18195_low_48
Description: NF18195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18195_low_48 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 427920 - 428162
Alignment:
| Q |
14 |
agataacacacaatataagtttttcnnnnnnnnctcaccaattgaaatggaatttttggatctggcagagctacagnnnnnnnnn------taacacatt |
107 |
Q |
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| T |
427920 |
agataacacacaatataagtttttcaaaaaaaactcaccaattgaaatggaatttttgcatctggcagagctacagaaaagaaaaaaaaaataacacatt |
428019 |
T |
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| Q |
108 |
taatttcgtctttaaatgatttacgagtttgaagtttgggatcaaatacttacgtatgacacaagtcattggtaaaatattgaatgtcatcagcagtaaa |
207 |
Q |
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| T |
428020 |
taatttcgtctttaaatgatttacgagtttgaagtttgggatcaaatacttacgtatgacacaagtcattggtaaaatattgaatgtcatcagcagtaaa |
428119 |
T |
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| Q |
208 |
atcattgagttgatgtccgaaatttcttctgagtggcctgagc |
250 |
Q |
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| T |
428120 |
atcattgagttgatgtccgaaatttcttctgagtggcctgagc |
428162 |
T |
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