View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18195_low_57 (Length: 230)
Name: NF18195_low_57
Description: NF18195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18195_low_57 |
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Alignment Details
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 104 - 212
Target Start/End: Complemental strand, 29006304 - 29006196
Alignment:
| Q |
104 |
atgaggaacccaatttaggcaattaactaccaggaatggggagggggccccaaattccaatctctattgagaatgtgcgcatgatttctgcagagatgag |
203 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
29006304 |
atgaggaaaccaatttaggcaattaactaccaggaatggggaggggggcccaaattccaatctatattgagaatgggcgcatgatttctgcagagatgag |
29006205 |
T |
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| Q |
204 |
gaaggtagg |
212 |
Q |
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||||||||| |
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| T |
29006204 |
gaaggtagg |
29006196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 13241867 - 13241906
Alignment:
| Q |
17 |
aaaatccataatggatttgagatattgataaggtgaatac |
56 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
13241867 |
aaaatccataatggatttgagatattgataaggtgaatac |
13241906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 29007184 - 29007145
Alignment:
| Q |
17 |
aaaatccataatggatttgagatattgataaggtgaatac |
56 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29007184 |
aaaatccataatggatttgagatattgataaggtgaatac |
29007145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 54835277 - 54835316
Alignment:
| Q |
17 |
aaaatccataatggatttgagatattgataaggtgaatac |
56 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
54835277 |
aaaatccataatggatttgagatattgataaggtgaatac |
54835316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 57
Target Start/End: Complemental strand, 41072942 - 41072908
Alignment:
| Q |
23 |
cataatggatttgagatattgataaggtgaatacc |
57 |
Q |
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| T |
41072942 |
cataatggatttgggatattgataaggtgaatacc |
41072908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 6951027 - 6951066
Alignment:
| Q |
17 |
aaaatccataatggatttgagatattgataaggtgaatac |
56 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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| T |
6951027 |
aaaatccataatggatttgagatattgataaggtgaatac |
6951066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 12333708 - 12333669
Alignment:
| Q |
17 |
aaaatccataatggatttgagatattgataaggtgaatac |
56 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12333708 |
aaaatccataatggatttgagatattgataaggtgaatac |
12333669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 18187062 - 18187023
Alignment:
| Q |
17 |
aaaatccataatggatttgagatattgataaggtgaatac |
56 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18187062 |
aaaatccataatggatttgagatattgataaggtgaatac |
18187023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 39507194 - 39507233
Alignment:
| Q |
17 |
aaaatccataatggatttgagatattgataaggtgaatac |
56 |
Q |
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||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
39507194 |
aaaattcataatggatttgagatattgataaggtgaatac |
39507233 |
T |
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