View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18195_low_8 (Length: 575)
Name: NF18195_low_8
Description: NF18195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18195_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 16 - 444
Target Start/End: Complemental strand, 39307728 - 39307300
Alignment:
| Q |
16 |
ttcctttctcacaggcaaaaatcaattaaagttgcaagatgaatccttgaagatgcctattcctatttttggcataactacttataatctggaagggtca |
115 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
39307728 |
ttcctttctcacagctaaaaatcaattaaagttgcaagatgaatccttgaagatgcctattcctatttttggcataactacttataacctggaagggtca |
39307629 |
T |
|
| Q |
116 |
attttgactcttccggaagcagcaaaatcagatgaaatgaactctttgttgaaggctgccgatgtttggttaaagagtttgaaggttgagcttcatcatg |
215 |
Q |
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|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
39307628 |
attttgactcttccgaaagcagcaaaatcagatgaaatgaactctttgttgaaggctgccgatgtttggttaaagagtttgaaggttgagcttcatcaag |
39307529 |
T |
|
| Q |
216 |
actacaacttttttgttaaggatggtaaacagtgggtaggagaatagaaagactgctggttggcattaggaatcattttgttaaggctgaaggttgaaga |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
39307528 |
actacaacttttttgttaaggatggtaaacagtgggtaggagaatagaaagactgctggttggcattaggaaccattttgttaaggctgaaggttgaaga |
39307429 |
T |
|
| Q |
316 |
tccatcatgacaaagatttcaaccatacttgcaaatggttgaagttaaatcagtgactgcatcttttattttgtttggttgcacatttattttggttaaa |
415 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39307428 |
tccatcatgacaaagatttcaaccatacttggaaatggttgaagttaaatcagtgactgcatcttttattttgtttggttgcacatttattttggttaaa |
39307329 |
T |
|
| Q |
416 |
tagtaagtctcttaaatcatgctagcaag |
444 |
Q |
| |
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||||||||||||||||||| ||||||||| |
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| T |
39307328 |
tagtaagtctcttaaatcaagctagcaag |
39307300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 484 - 559
Target Start/End: Complemental strand, 39307269 - 39307192
Alignment:
| Q |
484 |
gcatgcatgtatcattaaattttatcgttgaaa--gtcgtagctaaaaaatagtaagaataatcaatgtactagttgt |
559 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39307269 |
gcatgcatgtatcattaaattttatcgttgaaattgtcgtagctaaaaaatagtaagaataatcaatgtactagttgt |
39307192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 63 - 268
Target Start/End: Complemental strand, 39299845 - 39299640
Alignment:
| Q |
63 |
tgaagatgcctattcctatttttggcataactacttataatctggaagggtcaattttgactcttccggaagcagcaaaatcagatgaaatgaactcttt |
162 |
Q |
| |
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|||| |||||| |||| ||||||||| |||||||| |||| ||| || ||||||||||| || ||||| ||||| ||||| | || ||||| |||| |
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| T |
39299845 |
tgaaaatgcctcttccaatttttggcctaactactgataagctgaaaaggtcaattttggcttttccgaaagcacgtgaatcaactcaactgaacacttt |
39299746 |
T |
|
| Q |
163 |
gttgaaggctgccgatgtttggttaaagagtttgaaggttgagcttcatcatgactacaacttttttgttaaggatggtaaacagtgggtaggagaatag |
262 |
Q |
| |
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||||||||||||||||| ||||||| | |||||||| |||| ||| |||| ||||| |||||||| | ||||||| |||||||| | |||| || |
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| T |
39299745 |
gttgaaggctgccgatgattggttagacagtttgaatgttgtcagccattatgatcacaaccattttgttaggcatggtaagcagtgggtggaagaaaag |
39299646 |
T |
|
| Q |
263 |
aaagac |
268 |
Q |
| |
|
|||||| |
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|
| T |
39299645 |
aaagac |
39299640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 26563590 - 26563390
Alignment:
| Q |
18 |
cctttctcacaggcaaaaatcaattaaagttgcaagatgaatccttgaagatgcctattcctatttttggcataactacttataatctggaagggtcaat |
117 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||| | || |||||| |||| || |||||||||||||| ||||||||||||| ||| |||||||||| |
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| T |
26563590 |
cctttctcacaggcaaaaatcaaccaaatttgcaaaacaaacccttgacgatggctcttcctatttttggcttaactacttataacctgaaagggtcaat |
26563491 |
T |
|
| Q |
118 |
tttgactcttccggaagcagcaaaatcagatgaaatgaactctttgttgaaggctgccgatgtttggttaaagagtttgaaggttgagcttcatcatgac |
217 |
Q |
| |
|
|||||||||||||||| || | | ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
26563490 |
tttgactcttccggaaacatctgattcacatgaaatgaactcttagttgaaggctgccgatgtttggttaaagagtttgaaggttgaggttcatcatgac |
26563391 |
T |
|
| Q |
218 |
t |
218 |
Q |
| |
|
| |
|
|
| T |
26563390 |
t |
26563390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 32 - 243
Target Start/End: Complemental strand, 26555599 - 26555388
Alignment:
| Q |
32 |
aaaaatcaattaaagttgcaagatgaatccttgaagatgcctattcctatttttggcataactacttataatctggaagggtcaattttgactcttccgg |
131 |
Q |
| |
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|||||||||| ||| |||||||| || ||||||||||| || | ||||||||||| ||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
26555599 |
aaaaatcaatcaaaattgcaagacaaacccttgaagatggctctaactatttttggcttaactacttataacctgaaagggtcaattttgactcttccgg |
26555500 |
T |
|
| Q |
132 |
aagcagcaaaatcagatgaaatgaactctttgttgaaggctgccgatgtttggttaaagagtttgaaggttgagcttcatcatgactacaacttttttgt |
231 |
Q |
| |
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||| || | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||| |||||| |
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| T |
26555499 |
aagagtcagattcacatgaaatgaactctttgttgaaggctgccgatgtttggttaaagagtttgaaggttgaggttgatcatgaccacaactattttgt |
26555400 |
T |
|
| Q |
232 |
taaggatggtaa |
243 |
Q |
| |
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|||||| |||| |
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|
| T |
26555399 |
caaggatagtaa |
26555388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 26555104 - 26555343
Alignment:
| Q |
18 |
cctttctcacaggcaaaaatcaattaaagttgcaagatgaatccttgaagatgcctattcctatttttggcataactacttataatctggaagggtcaat |
117 |
Q |
| |
|
||||| ||||| ||||||||||| ||| |||||||| || ||||||| ||| || ||||||||| || | |||||||||||| || |||||||||| |
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| T |
26555104 |
cctttttcacatgcaaaaatcaaccaaaattgcaagacaaacccttgaatatggctcttcctatttctgtctcaactacttataacctcaaagggtcaat |
26555203 |
T |
|
| Q |
118 |
tttgactcttccggaagcagcaaaatcagatgaaatgaactctttgttgaaggctgccgatgtttggttaaagagtttgaaggttgagcttcatcatgac |
217 |
Q |
| |
|
||||||||||| ||||||| || | ||| | ||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||| |
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|
| T |
26555204 |
tttgactcttctggaagcatcagattcaca--------actctttgttgaaggttgccgatgtttggttaaatagtttgaaggttgaagttcatcatgac |
26555295 |
T |
|
| Q |
218 |
tacaacttttttgttaaggatggtaaacagtgggtaggagaatagaaa |
265 |
Q |
| |
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|||||| |||||| ||||||||||| ||| || ||| | |||||||| |
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|
| T |
26555296 |
tacaaccattttgtcaaggatggtaagcagcggatagaaaaatagaaa |
26555343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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