View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18195_low_9 (Length: 563)
Name: NF18195_low_9
Description: NF18195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18195_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 228 - 550
Target Start/End: Original strand, 3411420 - 3411748
Alignment:
| Q |
228 |
attagattcatgaagtgagtttttctttttcaaccgaattttgtccatatgtaagagttgtggtctgaactcaagtacttggctaatgaactcattgtta |
327 |
Q |
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| T |
3411420 |
attagatgcatgaagtgaatttttctttttcaaccgaattttgtccatatgtaagagttgtggtatgaacccaaatacttggctaatgaacttattgtca |
3411519 |
T |
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| Q |
328 |
gtgtctcaacaataattctacataaccacaattggacatggatttaatatttgagaaatgttaa-ccgtgtcttcgagacacttgttaaggatactaaaa |
426 |
Q |
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| T |
3411520 |
gtgtttcatcaataattctacataaccacaattggatgtggatttaatatttgggaaatgttaatcggtatctccaggacacttgttaaggatactaaac |
3411619 |
T |
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| Q |
427 |
atgaaattaggtattttggagatagtttaagaattgaccaatattactcatcataagtaaaag-tttatacttgagt-aaaaaatattaggtcaaaactt |
524 |
Q |
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| T |
3411620 |
atgaaattaggtactttggagatagtttaagaattgaccaatattactcatcataagtaaaagttttatacttgagtaaaaaaatattaggtcaaaactt |
3411719 |
T |
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| Q |
525 |
tgaacaataac---tagtaatccacaggt |
550 |
Q |
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| T |
3411720 |
tgaacaataaccagtagtaatccacaggt |
3411748 |
T |
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