View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18196_high_2 (Length: 961)

Name: NF18196_high_2
Description: NF18196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18196_high_2
NF18196_high_2
[»] chr2 (1 HSPs)
chr2 (19-952)||(44005969-44006902)


Alignment Details
Target: chr2 (Bit Score: 918; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 918; E-Value: 0
Query Start/End: Original strand, 19 - 952
Target Start/End: Original strand, 44005969 - 44006902
Alignment:
Q  19 aatattttatttgatcagttgctgaagttcttatgagatttgcctttgtaatttgaacacttaaagtggaaatttagattcttgtattactcttatgcaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44005969 aatattttatttgatcagttgctgaagttcttatgagatttgcctttgtaatttgaacacttaaagtggaaatttagattcttgtattactcttatgcaa 44006068  T
Q  119 cagatatcacatttattggaaatcaaaatcaatactttgtttaaagaagcatttaatcatttgttaaattattataattcctactgctaatccatgccaa 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44006069 cagatatcacatttattggaaatcaaaatcaatactttgtttaaagaagcatttaatcattttttaaattattataattcctactgctaatccatgccaa 44006168  T
Q  219 ttgcaaggaagataatcgtttgtgtaaggtatttttcaatttttgcttgttgtgaactttaatcatcattcatgttaactgtgaattaacaaatgctatt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44006169 ttgcaaggaagataatcgtttgtgtaaggtatttttcaatttttgcttgttgtgaactttaatcatcattcatgttaactgtgaattaacaaatgctatt 44006268  T
Q  319 ttcattagttttctgaatttgatgcagcaaagaaacactgatttcactcttttaacaggaatgaggtattaaggatcattctcggaagaattttgatctc 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44006269 ttcattagttttctgaatttgatgcagcaaagaaacactgatttcactcttttaacaggaatgaggtattaaggatcattctcggaagaattttgatctc 44006368  T
Q  419 atggctgattcttcttccaatctctctttacctcctgacacagtaagcgcaagacaaataaggtcctcactatttcacacctccggttctagggtgggag 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44006369 atggctgattcttcttccaatctctctttacctcctgacacagtaagcgcaagacaaataaggtcctcactatttcacacctccggttctagggtgggag 44006468  T
Q  519 ctggtgtgaaaaacttaccggattctgaatccgcttggagccctacttctccactcgattacagactcttctcaaatcttagcaatgtttttagcactaa 618  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  44006469 ctggtgtgaaaaacttaccggattctgaatccgcttggagccctacttctcctctcgattacagactcttctcaaatcttagcaatgtttttagcgctaa 44006568  T
Q  619 gtcttctagaccttcattccaaaccgagaataagaagccgttagatggaagtaaagtaggccttggtatcataacttctcttgttaatgaaaccaaacct 718  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44006569 gtcttctagaccttcattccaaaccgagaataagaagccgttagatggaagtaaagtaggccttggtatcataacttctcttgttaatgaaaccaaacct 44006668  T
Q  719 aataacgagatccttggtaaatttccaaggaaaaatataattttcggatcacaagtgaagaatcacatacttcaattctcaaagaataaccatgaatctc 818  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44006669 aataacgagatccttggtaaatttccaaggaaaaatataatttttggatcacaagtgaagaatcacatacttcaattctcaaagaataaccatgaatctc 44006768  T
Q  819 ttgcaccttttttgaaaaccaattccttgcccaaaaactatgtcatttcacttccttccgaaaccaaaagtcccacacttccttccaaaaccaaaagtcc 918  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44006769 ttgcaccttttttgaaaaccaattccttgcccaaaaactatgtcatttcacttccttccgaaaccaaaagtcccacacttccttccaaaaccaaaagtcc 44006868  T
Q  919 caaatcagaagtcgaaagctttgatgatgatgtc 952  Q
    ||||||||||||||||||||||||||||||||||    
T  44006869 caaatcagaagtcgaaagctttgatgatgatgtc 44006902  T

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