View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18196_high_27 (Length: 349)
Name: NF18196_high_27
Description: NF18196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18196_high_27 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 6 - 349
Target Start/End: Original strand, 54728734 - 54729077
Alignment:
| Q |
6 |
agagagaagaagagagtaggaggagtgtctggttaatatagttgatttggttttcttgttgattgtttggtgagtgacaatcaatatttatggtgtaaag |
105 |
Q |
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| T |
54728734 |
agagagaagaagagagtaggaggagtgtctggttaatatagttgatttggttttcttgttgattgtttggtgagtgacaatcaatatttatggtgtaaag |
54728833 |
T |
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| Q |
106 |
agaaggtgagccacaaatagctttgtcctatggctagggacaaactttaattgttttggtggttccaagtgatccagcgttaattatcttatctcaattt |
205 |
Q |
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| T |
54728834 |
agaaggtgagccacaaatagctttgtcctgtgactagggacaaacttgaattgttttggtggttccaagtgatccagcgttaattatcttatctcaattt |
54728933 |
T |
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| Q |
206 |
gtccctatcttttgaannnnnnncatcatttagttatcttgctttaggaagagaaggatgtgctaatatatatattccatgcagaaaaatgttttcaagt |
305 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
54728934 |
gtccctatcttttgaatttttttcatcatttagttatcttgctttaggaagagaaggatgtgctaatatatatattccatgcagaaaaatgttttgaagt |
54729033 |
T |
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| Q |
306 |
aaaattcagtaacttgcttagaaatgaatgagcgtagtagttct |
349 |
Q |
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|||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
54729034 |
aaaattgagtaacttgcttagaaatgaatgatcgtagtagttct |
54729077 |
T |
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