View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18196_high_28 (Length: 346)
Name: NF18196_high_28
Description: NF18196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18196_high_28 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 3 - 332
Target Start/End: Original strand, 44590024 - 44590353
Alignment:
| Q |
3 |
gaacgaacaagcatgctcaaagaatgggaactagactgcaaaaatagaaatgtaaaaatttcattacttattcttcctgttcaacaaggcgaattgatag |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44590024 |
gaacgaacaagcatgctcaaagaatgggaactagactgcaaaaatagaaatgtaaaaatttcattacttattcttcctgttcaacaaggcgaattgatag |
44590123 |
T |
|
| Q |
103 |
ctggtataatatcaaaacatcaagcttacctaccattttattagactcaacatcagaattaagagtagccagagttttttcattgattgatgaggtcctt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44590124 |
ctggtataatatcaaaacatcaagcttacctaccattttattagactcaacatcagaattaagagtagccagagttttttcattgattgatgaggtcctt |
44590223 |
T |
|
| Q |
203 |
gacaaggaattagtaaatggttctgagttttttctcacaagagattttgcagagatagtaggtttgagatttccaccaaatttccacacaccatttgccc |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44590224 |
gacaaggaattagtaaatggttctgagttttttctcacaagagattttgcagagatggtaggtttgagatttccaccaaatttccacacaccatttgccc |
44590323 |
T |
|
| Q |
303 |
cattttgtttccattcaccataggatttaa |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
44590324 |
cattttgtttccattcaccataggatttaa |
44590353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 125 - 332
Target Start/End: Complemental strand, 39339580 - 39339373
Alignment:
| Q |
125 |
agcttacctaccattttattagactcaacatcagaattaagagtagccagagttttttcattgattgatgaggtccttgacaaggaattagtaaatggtt |
224 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| ||| || || || || |||||||||||| || ||||||||||| |||||||| |||||||| | |
|
|
| T |
39339580 |
agcttaccaaccattttattagactcgacatcagaggtaaaagaagtcatagatttttcattgatggaagaggtccttgataaggaattggtaaatggct |
39339481 |
T |
|
| Q |
225 |
ctgagttttttctcacaagagattttgcagagatagtaggtttgagatttccaccaaatttccacacaccatttgccccattttgtttccattcaccata |
324 |
Q |
| |
|
| |||||||||||||||| ||||||||||| ||| | ||||||| | |||||||||||||||| |||||||| |||||| ||||||||||||||| ||| |
|
|
| T |
39339480 |
cagagttttttctcacaaaagattttgcagtgattgctggtttgatagttccaccaaatttccatacaccattagccccagtttgtttccattcactata |
39339381 |
T |
|
| Q |
325 |
ggatttaa |
332 |
Q |
| |
|
|||||||| |
|
|
| T |
39339380 |
ggatttaa |
39339373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University