View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18196_high_32 (Length: 326)
Name: NF18196_high_32
Description: NF18196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18196_high_32 |
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| [»] scaffold0268 (1 HSPs) |
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Alignment Details
Target: scaffold0268 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: scaffold0268
Description:
Target: scaffold0268; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 22721 - 22422
Alignment:
| Q |
18 |
agtacatctcagaatggatgttttcaattgcaatctggaaaccatagaaggcacgtgcttcggagatttgaacttctttcatgaaccttccggcaagatt |
117 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
22721 |
agtacatctcagaatggatgttttcaattgcaatttggaaaccatagaaggcacgtgcttcggagatttggacttctttcatgaatcttccggcaagatt |
22622 |
T |
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| Q |
118 |
ttcaaggacaattccgtctgaggcggcgaagaaggcgagaacgtgagagacgaagtggcgttcaccgtcagtgaggttgttccagttcttgagatcggag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||| |||||||||||||||| ||||||||||||| |
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| T |
22621 |
ttcaaggacaattccgtctgaggcggcgaagaaggcaagaacgtgagagatgaagtggcgttcgccgtctgtgaggttgttccagtgcttgagatcggag |
22522 |
T |
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| Q |
218 |
gaaagatcaacttcttcggcggtccagaatgaggcttcggcttttttgtacatttcccagatttttgggtattggattgggaacatgcagaatcggtctg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22521 |
gaaagatcaacttcttcggcggtccagaatgaggcttcggcttttttgtacatttcccagatttttgggtattggattgggaacatgcagaatcggtctg |
22422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 18 - 317
Target Start/End: Original strand, 10197367 - 10197666
Alignment:
| Q |
18 |
agtacatctcagaatggatgttttcaattgcaatctggaaaccatagaaggcacgtgcttcggagatttgaacttctttcatgaaccttccggcaagatt |
117 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
10197367 |
agtacatctcagaatggatgttttcaattgcaatttggaaaccatagaaggcacgtgcttcggagatttggacttctttcatgaatcttccggcaagatt |
10197466 |
T |
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| Q |
118 |
ttcaaggacaattccgtctgaggcggcgaagaaggcgagaacgtgagagacgaagtggcgttcaccgtcagtgaggttgttccagttcttgagatcggag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| ||||| |||||||||||||||| ||||||||||||| |
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| T |
10197467 |
ttcaaggacaattccgtctgaggcggcgaagaaggcaagaacgtgagagatgaagtggcgttcgccgtctgtgaggttgttccagtgcttgagatcggag |
10197566 |
T |
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| Q |
218 |
gaaagatcaacttcttcggcggtccagaatgaggcttcggcttttttgtacatttcccagatttttgggtattggattgggaacatgcagaatcggtctg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10197567 |
gaaagatcaacttcttcggcggtccagaatgaggcttcggcttttttgtacatttcccagatttttgggtattggattgggaacatgcagaatcggtctg |
10197666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 20 - 317
Target Start/End: Complemental strand, 19457230 - 19456933
Alignment:
| Q |
20 |
tacatctcagaatggatgttttcaattgcaatctggaaaccatagaaggcacgtgcttcggagatttgaacttctttcatgaaccttccggcaagatttt |
119 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||| | ||||||||| || || ||||| ||||||| |
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| T |
19457230 |
tacatctcagagtggatgttttcaattgcaatctggaaaccgtagaaggcacgtgcttcagagacttggatttctttcataaatctaccggcgagatttt |
19457131 |
T |
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| Q |
120 |
caaggacaattccgtctgaggcggcgaagaaggcgagaacgtgagagacgaagtggcgttcaccgtcagtgaggttgttccagttcttgagatcggagga |
219 |
Q |
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||||||| || ||||| ||||| |||||||||||||| || ||||||| |||||||||||| ||||| |||||||| | ||||| ||||||||||||||| |
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| T |
19457130 |
caaggacgatgccgtcggaggcagcgaagaaggcgaggacatgagagatgaagtggcgttcgccgtcggtgaggttttgccagtgcttgagatcggagga |
19457031 |
T |
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| Q |
220 |
aagatcaacttcttcggcggtccagaatgaggcttcggcttttttgtacatttcccagatttttgggtattggattgggaacatgcagaatcggtctg |
317 |
Q |
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|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19457030 |
aagatcgacttcttcagcggtccagaatgaggcttcggcttttttgtacatttcccagatttttgggtattggattgggaacatgcagaatcggtctg |
19456933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 20 - 317
Target Start/End: Original strand, 25025861 - 25026158
Alignment:
| Q |
20 |
tacatctcagaatggatgttttcaattgcaatctggaaaccatagaaggcacgtgcttcggagatttgaacttctttcatgaaccttccggcaagatttt |
119 |
Q |
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|||||||| || |||||||||||||| || || || || || ||||| ||||| ||||| ||||||||||||||||||||||| |||||||| ||||||| |
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| T |
25025861 |
tacatctctgagtggatgttttcaatagcgatttgaaacccgtagaaagcacgcgcttcagagatttgaacttctttcatgaatcttccggcgagatttt |
25025960 |
T |
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| Q |
120 |
caaggacaattccgtctgaggcggcgaagaaggcgagaacgtgagagacgaagtggcgttcaccgtcagtgaggttgttccagttcttgagatcggagga |
219 |
Q |
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| ||||| || ||||| |||||||||||||||||||| | |||||||| |||||||||||| ||||| |||||||||||||||| | ||||||||||| |
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| T |
25025961 |
cgaggacgataccgtcggaggcggcgaagaaggcgaggatgtgagagatgaagtggcgttcgccgtcggtgaggttgttccagtgttgaagatcggagga |
25026060 |
T |
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| Q |
220 |
aagatcaacttcttcggcggtccagaatgaggcttcggcttttttgtacatttcccagatttttgggtattggattgggaacatgcagaatcggtctg |
317 |
Q |
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|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
25026061 |
aagatcgacttcttcggcggtccagaaagaggcttcggcttttttgtacatttcccagatttttgggtattggattgggaacatacagaatcggtctg |
25026158 |
T |
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