View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18196_high_35 (Length: 314)
Name: NF18196_high_35
Description: NF18196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18196_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 9905746 - 9905494
Alignment:
| Q |
18 |
aacaattacctacaaaggtattacctaagaacctaaattccaggtaaaatccgaatgaaacgtgtttcctaaggaaaattcattaatttcggaagaaaaa |
117 |
Q |
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| T |
9905746 |
aacaattacccacaaaggtattatctaagaatctaaattcctggcaaaattcgaatgaaatgtgtttcctaaggaaaattcattaattttggaagaaaaa |
9905647 |
T |
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| Q |
118 |
tcgagagtttctagtagtgaaatctcggagataaaaaatagcatcgttatgaaaaaatgaaggatattaactcataccaatttcatatcaactcaaattc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
9905646 |
tcgagagtttctagtagtgaaatctcggagataaaaaatagcatcgttatgaaaaaatgaagaatattaactcataccaatttcatatcaactcaaattc |
9905547 |
T |
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| Q |
218 |
tctggtctattctcaatgcaaaaagaaaggatttcaattcatactttcatttc |
270 |
Q |
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| T |
9905546 |
tttggtctattctcaatgcaaaaagaaatgatttcaattcatacttttatttc |
9905494 |
T |
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