View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18196_high_37 (Length: 309)
Name: NF18196_high_37
Description: NF18196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18196_high_37 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 24 - 293
Target Start/End: Original strand, 36313129 - 36313398
Alignment:
| Q |
24 |
gaacagatatcatattgccccaaaaagaagcacgatcattataataattgtcttcatggttataacgaactggcatgcgcaaatcattaatctgatcaat |
123 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
36313129 |
gaacagatataatattgccccaaaaagaagcacgatcattataatagttgttttcatggttataacgaactggcatgtgcaaatcattaatctgatcaat |
36313228 |
T |
|
| Q |
124 |
gcagcttttctccaaactttcattcaaataatgacaatcacgaatgtcaagagattcaagaagagggcatttatcaataatggcgagcacaccaagttca |
223 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36313229 |
gcagcttttctccaaaccttcattcaaataatgacaatcacgaatgtcaagagactcaagaagagggcatttatcaataatggcgagcacaccaagttca |
36313328 |
T |
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| Q |
224 |
gtgagcttgtgtcctttcatatcaagatggcgtagaccaggcattgtttcagcaataacaagtgccgttt |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36313329 |
gtgagcttgtgtcctttcatatcaagatggcgtagaccaggcattgtttcagcaataacaagtgccgttt |
36313398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 95 - 285
Target Start/End: Original strand, 36333266 - 36333457
Alignment:
| Q |
95 |
ggcatgcgcaaatcattaatctgatcaatgcagctttt-ctccaaactttcattcaaataatgacaatcacgaatgtcaagagattcaagaagagggcat |
193 |
Q |
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| T |
36333266 |
ggcattcgcatatcattgatttgatcaatgcacctttttctccaaatcttcattcaaataatgacaatcacgaatgtcaagagactcaagaagagggcct |
36333365 |
T |
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| Q |
194 |
ttatcaataatggcgagcacaccaagttcagtgagcttgtgtcctttcatatcaagatggcgtagaccaggcattgtttcagcaataacaag |
285 |
Q |
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| T |
36333366 |
ttatcaataatggcgagcacaccaagttgagtgagcttgtgtcctttcatatcaagatggcatagaccaggcatcgtttcagcaatagcaag |
36333457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 71 - 284
Target Start/End: Original strand, 36327418 - 36327631
Alignment:
| Q |
71 |
ttgtcttcatggttataacgaactggcatgcgcaaatcattaatctgatcaatgcagcttttctccaaactttcattcaaataatgacaatcacgaatgt |
170 |
Q |
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|||||||||||| |||||||| ||||| ||||||| || ||||| |||||||| ||||||| |||| |||| |||||||||||||||||| ||||| |
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| T |
36327418 |
ttgtcttcatggatataacgacttggcagttgcaaatccttgatctggtcaatgcaccttttcttcaaatcttcagtcaaataatgacaatcactaatgt |
36327517 |
T |
|
| Q |
171 |
caagagattcaagaagagggcatttatcaataatggcgagcacaccaagttcagtgagcttgtgtcctttcatatcaagatggcgtagaccaggcattgt |
270 |
Q |
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| T |
36327518 |
caagagactcaagaagagggcagctatcaataatggcaagcacaccaagttcagtgagctcgtgtcctttcaaatcaagatggcgtagaccaggcatcgt |
36327617 |
T |
|
| Q |
271 |
ttcagcaataacaa |
284 |
Q |
| |
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|||||||||||||| |
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| T |
36327618 |
ttcagcaataacaa |
36327631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 102 - 281
Target Start/End: Original strand, 36335978 - 36336157
Alignment:
| Q |
102 |
gcaaatcattaatctgatcaatgcagcttttctccaaactttcattcaaataatgacaatcacgaatgtcaagagattcaagaagagggcatttatcaat |
201 |
Q |
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||||||| || ||||| |||||||| ||||||| |||| ||||||||||| | ||||| || |||||||||| ||||||||||||||||||||||||| |
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| T |
36335978 |
gcaaatccttgatctggtcaatgcaccttttcttcaaatcttcattcaaattaagacaaaaactaatgtcaagatattcaagaagagggcatttatcaat |
36336077 |
T |
|
| Q |
202 |
aatggcgagcacaccaagttcagtgagcttgtgtcctttcatatcaagatggcgtagaccaggcattgtttcagcaataa |
281 |
Q |
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| T |
36336078 |
aatggcgagcacgccaagttcagtgagcttgtgtcctctcatatcaagatggcatagaccaggcattgtttcagcaataa |
36336157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 102 - 285
Target Start/End: Original strand, 36320605 - 36320788
Alignment:
| Q |
102 |
gcaaatcattaatctgatcaatgcagcttttctccaaactttcattcaaataatgacaatcacgaatgtcaagagattcaagaagagggcatttatcaat |
201 |
Q |
| |
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||||||| || ||||| |||||||| |||||| |||| |||| |||||||||||||||||| |||||||||||||||||||| ||| ||||||||||| |
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| T |
36320605 |
gcaaatccttgatctggtcaatgcaccttttcgtcaaatcttcactcaaataatgacaatcactaatgtcaagagattcaagaacaggacatttatcaat |
36320704 |
T |
|
| Q |
202 |
aatggcgagcacaccaagttcagtgagcttgtgtcctttcatatcaagatggcgtagaccaggcattgtttcagcaataacaag |
285 |
Q |
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| T |
36320705 |
aatggcacgcacaccaagttcactgagattgtgtcctttcatatcaagatggcatagaccaggcatcgtttcagcaatagcaag |
36320788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 156 - 284
Target Start/End: Original strand, 36325639 - 36325767
Alignment:
| Q |
156 |
gacaatcacgaatgtcaagagattcaagaagagggcatttatcaataatggcgagcacaccaagttcagtgagcttgtgtcctttcatatcaagatggcg |
255 |
Q |
| |
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||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
36325639 |
gacaaacactaatgtcaagagattcaagaagagggcatttatcaattatggcgagcacacgaagttcactgagcttgtgtcctttcatatcaagatggca |
36325738 |
T |
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| Q |
256 |
tagaccaggcattgtttcagcaataacaa |
284 |
Q |
| |
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|||||||||||| |||||||||||||||| |
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| T |
36325739 |
tagaccaggcatcgtttcagcaataacaa |
36325767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 102 - 207
Target Start/End: Original strand, 36309083 - 36309194
Alignment:
| Q |
102 |
gcaaatcattaatctgatcaatgcagcttttctccaaactttcattcaa------ataatgacaatcacgaatgtcaagagattcaagaagagggcattt |
195 |
Q |
| |
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|||||||||| |||||||||||||| ||||||| |||||||||| |||| |||||| || ||||||||||||||||| ||| |||||||| || |
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| T |
36309083 |
gcaaatcattgatctgatcaatgcaccttttcttcaaactttcactcaattcaagataatgtcatcgacgaatgtcaagagatttaagcagagggcactt |
36309182 |
T |
|
| Q |
196 |
atcaataatggc |
207 |
Q |
| |
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| ||| |||||| |
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| T |
36309183 |
aacaagaatggc |
36309194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 169 - 282
Target Start/End: Original strand, 16052979 - 16053092
Alignment:
| Q |
169 |
gtcaagagattcaagaagagggcatttatcaataatggcgagcacaccaagttcagtgagcttgtgtcctttcatatcaagatggcgtagaccaggcatt |
268 |
Q |
| |
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||||||||||||||||| |||||||||||||| ||||||||||| |||| | |||||| |||| ||| || |||||||||| || |||| || ||| |
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| T |
16052979 |
gtcaagagattcaagaaaagggcatttatcaagaatggcgagcaaaccatcattagtgaggttgtctcccttgatatcaagatagcatagattagtcatc |
16053078 |
T |
|
| Q |
269 |
gtttcagcaataac |
282 |
Q |
| |
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|| ||||||||||| |
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| T |
16053079 |
gtatcagcaataac |
16053092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 15936262 - 15936214
Alignment:
| Q |
169 |
gtcaagagattcaagaagagggcatttatcaataatggcgagcacacca |
217 |
Q |
| |
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||||||||||||||||| ||| |||||||||| ||||||||||| |||| |
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|
| T |
15936262 |
gtcaagagattcaagaaaaggccatttatcaagaatggcgagcaaacca |
15936214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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