View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18196_high_42 (Length: 290)
Name: NF18196_high_42
Description: NF18196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18196_high_42 |
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Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 23 - 271
Target Start/End: Complemental strand, 9174684 - 9174436
Alignment:
| Q |
23 |
ttcaacccactagacctagttttatctccataaccactcccacttttaccatatccatactttgaataatactcagtgcactggtaccgacacaggcctc |
122 |
Q |
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| T |
9174684 |
ttcaacccactagacctagttttatctccataaccactcccacttttaccatatccatactttgaataatactcagtgcactggtaccgacacaggcctc |
9174585 |
T |
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| Q |
123 |
caccaccagcatgcgactggtaattatatttggcacgtttgcgatcatccataagaacttcatacgcttcagaaacctgtttgaatcgaagtttggcgtt |
222 |
Q |
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| T |
9174584 |
caccaccagcatgcgactggtaattatatttggcacgtttgcgatcatccataagaacttcatatgcttcagaaacctgtttgaatcgaagtttggcgtt |
9174485 |
T |
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| Q |
223 |
gtgttgaacgtatttcggtgactgagaatgcttatctggatgacattga |
271 |
Q |
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| T |
9174484 |
gtgttgaacgtatttcggtgactgagaatgcttatctggatgacattga |
9174436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 23 - 271
Target Start/End: Original strand, 9154021 - 9154269
Alignment:
| Q |
23 |
ttcaacccactagacctagttttatctccataaccactcccacttttaccatatccatactttgaataatactcagtgcactggtaccgacacaggcctc |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9154021 |
ttcaacccactagacctagttttatctccataaccactcccacttttaccatatccatactttgaataatactcagtgcactggtaccgacacaggcctc |
9154120 |
T |
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| Q |
123 |
caccaccagcatgcgactggtaattatatttggcacgtttgcgatcatccataagaacttcatacgcttcagaaacctgtttgaatcgaagtttggcgtt |
222 |
Q |
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| T |
9154121 |
caccaccagcatgcgactggtaattatatttggcgcgtttgcgatcatccataagaacttcatatgcttcagaaacctgtttgaatcgaagtttggcgtt |
9154220 |
T |
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| Q |
223 |
gtgttgaacgtatttcggtgactgagaatgcttatctggatgacattga |
271 |
Q |
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| T |
9154221 |
gtgttgaacgtatttcagtgactgagaatgcttatctggatgacattga |
9154269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 164 - 271
Target Start/End: Original strand, 9109897 - 9110004
Alignment:
| Q |
164 |
cgatcatccataagaacttcatacgcttcagaaacctgtttgaatcgaagtttggcgttgtgttgaacgtatttcggtgactgagaatgcttatctggat |
263 |
Q |
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||||||||||| ||||| |||||||||||||||||||| || ||||||| | | || || | | |||| |||| | ||| ||||||||||||||||||| |
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| T |
9109897 |
cgatcatccatgagaacctcatacgcttcagaaacctgcttaaatcgaattgttgcattttctctaacggatttagatgattgagaatgcttatctggat |
9109996 |
T |
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| Q |
264 |
gacattga |
271 |
Q |
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|| ||||| |
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| T |
9109997 |
gaaattga |
9110004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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