View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18196_high_48 (Length: 267)
Name: NF18196_high_48
Description: NF18196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18196_high_48 |
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| [»] scaffold0635 (1 HSPs) |
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Alignment Details
Target: scaffold0635 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: scaffold0635
Description:
Target: scaffold0635; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 40 - 227
Target Start/End: Complemental strand, 3489 - 3302
Alignment:
| Q |
40 |
aaagaagggaaaaataagagttgcttctttcaactttggttattctcatttcataaatgttaaaatttcataagatacatgtgttctttaggtgtgaagc |
139 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3489 |
aaagaagggaaaaataagaattgcttctttcaactttggttattctcatttcataaatgttaaaatttcataagatacatgtgttctttaggtgtgaagc |
3390 |
T |
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| Q |
140 |
accatatgcatgattcacttataatatcatgtaattcctatcaaaccatataatgaaatgatgtgatattcaattgttcgaatatttt |
227 |
Q |
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| T |
3389 |
accatatgcatgattcacttataatatcatgtaattcctatcaaaccatataatgaaatgatgtgatattcaactgtttgaatatttt |
3302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 40 - 227
Target Start/End: Original strand, 10043581 - 10043768
Alignment:
| Q |
40 |
aaagaagggaaaaataagagttgcttctttcaactttggttattctcatttcataaatgttaaaatttcataagatacatgtgttctttaggtgtgaagc |
139 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10043581 |
aaagaagggaaaaataagaattgcttctttcaactttggttattctcatttcataaatgttaaaatttcataagatacatgtgttctttaggtgtgaagc |
10043680 |
T |
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| Q |
140 |
accatatgcatgattcacttataatatcatgtaattcctatcaaaccatataatgaaatgatgtgatattcaattgttcgaatatttt |
227 |
Q |
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| T |
10043681 |
accatatgcatgattcacttataatatcatgtaattcctatcaaaccatataatgaaatgatgtgatattcaactgtttgaatatttt |
10043768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 40 - 227
Target Start/End: Original strand, 10105295 - 10105482
Alignment:
| Q |
40 |
aaagaagggaaaaataagagttgcttctttcaactttggttattctcatttcataaatgttaaaatttcataagatacatgtgttctttaggtgtgaagc |
139 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10105295 |
aaagaagggaaaaataagaattgcttctttcaactttggttattctcatttcataaatgttaaaatttcataagatacatgtgttctttaggtgtgaagc |
10105394 |
T |
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| Q |
140 |
accatatgcatgattcacttataatatcatgtaattcctatcaaaccatataatgaaatgatgtgatattcaattgttcgaatatttt |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
10105395 |
accatatgcatgattcacttataatatcatgtaattcctatcaaaccatataatgaaatgatgtgatattcaactgtttgaatatttt |
10105482 |
T |
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