View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18196_high_54 (Length: 239)
Name: NF18196_high_54
Description: NF18196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18196_high_54 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 2410780 - 2410999
Alignment:
| Q |
11 |
catcatcatgacggcgtttatcaggtttggtgaggtcgacaaacttaggtgcttcgatcttctcgtagaaatcgtcgtcaatttctatttcctcttcttc |
110 |
Q |
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| T |
2410780 |
catcatcaggacggcgtttatcaggtttggtgaggtcgacaaacttaggtgcttcgatcttctcgtagaaatcgtcgtcaatttctatttcctcttcttc |
2410879 |
T |
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| Q |
111 |
aattataggcaagaatcgattttctgacattattttgttaacaaaagaaaagtgttacagtaacacagtgttgtttttgttttggtgtttgtaacaacaa |
210 |
Q |
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| T |
2410880 |
aattataggcaagaatcgattttctgacattattttgtt--------aagagcgttacagtaacacagtgttgtttttgttttggtg-ttgtaacaacaa |
2410970 |
T |
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| Q |
211 |
gtttagattgttcgaagaattttaaagtc |
239 |
Q |
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| T |
2410971 |
gtttagattgttcgaagaattttaaagtc |
2410999 |
T |
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