View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18196_high_62 (Length: 205)
Name: NF18196_high_62
Description: NF18196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18196_high_62 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 3568373 - 3568203
Alignment:
| Q |
19 |
attgcaaataataaacaaaaatgagaatcttgtgtgtgatttgaacaaattgaactaagatacttgaaggccaaatagattgaattggaacaattattaa |
118 |
Q |
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| T |
3568373 |
attgcaaataataaacaaaaatgagaatcttgtgtgtgatttgaacaaattcaactaagatacttgaaggccaaatagattgaattggaacagttattaa |
3568274 |
T |
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| Q |
119 |
gatagaaacattctaacctctccatattcaagagtccgattaatcaaggaaatcacggtcaacgtaaatat |
189 |
Q |
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| T |
3568273 |
gatagaaacattctaacctctccatattcaagagtccgattaatcaaggaaatcacggtcaacgtaaatat |
3568203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 55 - 189
Target Start/End: Complemental strand, 3576851 - 3576716
Alignment:
| Q |
55 |
tgatttgaacaaattgaactaagatacttgaaggccaa-atagattgaattggaacaattattaagatagaaacattctaacctctccatattcaagagt |
153 |
Q |
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| T |
3576851 |
tgatttgcacaaaatgaactgcgttacttgaaggccaagatagattgaattggaacaattattaagatagaaaaattttaacctctccatattcatgagt |
3576752 |
T |
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| Q |
154 |
ccgattaatcaaggaaatcacggtcaacgtaaatat |
189 |
Q |
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| T |
3576751 |
ccgattaatcaaggaaatcacagtcaacctaaatat |
3576716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 92
Target Start/End: Complemental strand, 1408566 - 1408514
Alignment:
| Q |
41 |
gagaatcttg-tgtgtgatttgaacaaattgaactaagatacttgaaggccaa |
92 |
Q |
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| T |
1408566 |
gagaatcttggtgtgtgatttgaacaaaatgaactgagatacttgaagaccaa |
1408514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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