View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18196_high_7 (Length: 602)
Name: NF18196_high_7
Description: NF18196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18196_high_7 |
 | |
|
| [»] scaffold0272 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 263 - 584
Target Start/End: Complemental strand, 33721326 - 33721005
Alignment:
| Q |
263 |
gaatggaagtcacctcaaaacatgaagaacgaagccttgaatagtggtcatgtcctgagaaatttcgtgccccaatttgcagttcgtacacagcaggaat |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
33721326 |
gaatggaagtcacctcaaaacatgaagaacgaagccttgaatagtggtcatgtcctgagaaatttcgtgccccgatttgcagttcgtacacagtaggaat |
33721227 |
T |
|
| Q |
363 |
tgaccgttatccacaaaattgtgctccgattttatacattcatgctccgatttttgtcgtataaaaactcccaaaacaatgattcctatcataattctat |
462 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
33721226 |
tgaccgttatccacaagattgtgctccgattttatacattcatgccccgatttttgtcttataaaaactcccacagcaatgattcctatcataattctat |
33721127 |
T |
|
| Q |
463 |
taatttatcaaagattgctactccatatactttcatttctatgctaatctatagcactaattagaggaagaaagctggttagctgagaaactagagttga |
562 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33721126 |
taatttatcaaagattgctactccatatactttcatttctatgctaatctatagcactaattagaggaagaaagctggttagctgagaaactagagttga |
33721027 |
T |
|
| Q |
563 |
gagacaacattacactatatct |
584 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
33721026 |
gagacaacattacactatatct |
33721005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 434 - 530
Target Start/End: Complemental strand, 21219634 - 21219536
Alignment:
| Q |
434 |
caaaacaatgattcctatcataattctattaatttatcaaagattgctac--tccatatactttcatttctatgctaatctatagcactaattagagga |
530 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||||||||||||| |||| | ||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
21219634 |
caaaacaataattcctatcataattctattactttatcaaagattgctacaaagcatacattttcatttctaggctaatctatagcaataattagagga |
21219536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 133; Significance: 7e-69; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 58 - 254
Target Start/End: Original strand, 7263 - 7462
Alignment:
| Q |
58 |
tttattgaggacctcactttgcccatcggtttgaggacatttattgagtgttcttatgtaattgttactagtgaactg-cactaataggagttggtctca |
156 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||| | |
|
|
| T |
7263 |
tttattgaggacctcacttttcccataggtttgaggacatttattgagtgttcttatgcaattgttactagtgaactgacactaataggaattggtctaa |
7362 |
T |
|
| Q |
157 |
aaattggactgtaaggtcctggtgctttggaaaaagaaagagataaacaacatatttgaaagaaag--aaagatcaaagacataagtgaatccaatgcca |
254 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||||||||| | |||| |||||||| ||| |||||||||| ||||||||||||||||| |
|
|
| T |
7363 |
aaattggactgttaggttctggtgctttggaaaaagaaagagataaacaaaagatttaaaagaaagaaaaatatcaaagacacaagtgaatccaatgcca |
7462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 269 - 393
Target Start/End: Complemental strand, 24944914 - 24944790
Alignment:
| Q |
269 |
aagtcacctcaaaacatgaagaacgaagccttgaatagtggtcatgtcctgagaaatttcgtgccccaatttgcagttcgtacacagcaggaattgaccg |
368 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||| || | || ||| || |||||| ||||||| | || ||| |||||||| | ||||||||| |
|
|
| T |
24944914 |
aagtcacctcacaacatgaagagcgaagccttgaataatgcttatatcccgaaaaattttgtgccccgaactgttgtttgtacacagtacgaattgacct |
24944815 |
T |
|
| Q |
369 |
ttatccacaaaattgtgctccgatt |
393 |
Q |
| |
|
||||||||||||| ||||||||||| |
|
|
| T |
24944814 |
ttatccacaaaatcgtgctccgatt |
24944790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 443 - 479
Target Start/End: Original strand, 21657497 - 21657533
Alignment:
| Q |
443 |
gattcctatcataattctattaatttatcaaagattg |
479 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
21657497 |
gattcctatcacaattctattattttatcaaagattg |
21657533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University