View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18196_high_9 (Length: 586)
Name: NF18196_high_9
Description: NF18196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18196_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 534; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 1 - 578
Target Start/End: Complemental strand, 32831141 - 32830564
Alignment:
| Q |
1 |
gcacaattggataaactgtgttactaccaaatatcatgtgtttttctgtttgtgttgcttttccaacaggtaagcttgaagaagcgaaacaagttttgat |
100 |
Q |
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| T |
32831141 |
gcacaattggataaactgtgttatcaccaaatatcatgtgtttttctgtttgtgttgcttttccaacaggtaaacttgaagaagcgaaacaagttttgat |
32831042 |
T |
|
| Q |
101 |
tagaacatcgtcgaataaaggtgaagctgaatttagactttcagaaatttcacaagctgctacaatttctagtacttcttctaggcatggacaaggggta |
200 |
Q |
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| T |
32831041 |
tagaacatcgtcgaataaaggtgaagctgaatttagactttcagaaatttcacaagctgctacaaattctagtacttcttctaggcatggacaaggggta |
32830942 |
T |
|
| Q |
201 |
tggaaagaattgctaattacacctacacgtcctgtattaaggattcttatagctgcagttggtattaattttttcatgcaagcttctggaaatgatgctg |
300 |
Q |
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| T |
32830941 |
tggaaagaattgctaattacaccgacacgtcctgtactaaggattcttatagcagcagttggtattaattttttcatgcaagcgtctggaaatgatgctg |
32830842 |
T |
|
| Q |
301 |
ttatatattacagtcctgaagtgtttagagaagctggagttaaaggtgagaagcaactttttggtgtcacaatcattatgggaatagcaaagacatgttt |
400 |
Q |
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| T |
32830841 |
ttatatattacagtcctgaagtgtttagagaagctggagttaaaggtgagaagcaactttttggtgtcacaatcattatgggaatagcaaagacatgttt |
32830742 |
T |
|
| Q |
401 |
tgttctattttcagcattggtattagacaaatttggaagaaggcccatgctgttgttgggctcatcaggtatggcagtgtccttatttgggcttggaatg |
500 |
Q |
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| T |
32830741 |
tgttctattttcagcattggtattagacagatttggaagaaggcccatgttgttgttgggctcatcaggtatggcagtgtccttatttgggcttggaatg |
32830642 |
T |
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| Q |
501 |
ggatgtactttacttcacaattcagatgaaaagcccatgtgggctattgctttgtgtgtggttgctgtctgtgctgct |
578 |
Q |
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| T |
32830641 |
ggatgtactttacttcacaattcagatgaaaagcccatgtgggctattgctttgtgtgtggttgctgtttgtgctgct |
32830564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 311
Target Start/End: Original strand, 43547086 - 43547138
Alignment:
| Q |
259 |
ttggtattaattttttcatgcaagcttctggaaatgatgctgttatatattac |
311 |
Q |
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|||| |||||||| ||||||||||| |||||||| ||||| |||||||||||| |
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| T |
43547086 |
ttgggattaatttcttcatgcaagcatctggaaacgatgccgttatatattac |
43547138 |
T |
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