View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18196_low_1 (Length: 1143)

Name: NF18196_low_1
Description: NF18196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18196_low_1
NF18196_low_1
[»] chr5 (3 HSPs)
chr5 (10-945)||(5269929-5270866)
chr5 (993-1122)||(5270875-5271004)
chr5 (645-749)||(29161127-29161231)
[»] chr8 (6 HSPs)
chr8 (646-760)||(30284393-30284507)
chr8 (658-745)||(30051670-30051757)
chr8 (663-757)||(11207434-11207528)
chr8 (426-467)||(22759030-22759071)
chr8 (703-762)||(35578290-35578349)
chr8 (658-761)||(42869167-42869270)
[»] chr4 (4 HSPs)
chr4 (566-729)||(5912577-5912737)
chr4 (642-762)||(24188092-24188211)
chr4 (689-758)||(5958671-5958740)
chr4 (663-751)||(38868019-38868107)
[»] chr7 (3 HSPs)
chr7 (663-759)||(48433161-48433257)
chr7 (658-759)||(48433316-48433417)
chr7 (685-761)||(33008504-33008580)
[»] chr1 (3 HSPs)
chr1 (665-750)||(33580774-33580861)
chr1 (642-760)||(6421573-6421691)
chr1 (644-713)||(6349483-6349552)
[»] chr3 (3 HSPs)
chr3 (547-716)||(52750110-52750277)
chr3 (663-760)||(20505163-20505263)
chr3 (701-758)||(3727278-3727335)
[»] chr6 (4 HSPs)
chr6 (663-761)||(7379647-7379745)
chr6 (665-729)||(4433071-4433135)
chr6 (708-759)||(30603465-30603516)
chr6 (664-729)||(32847512-32847577)
[»] chr2 (3 HSPs)
chr2 (663-757)||(15396103-15396196)
chr2 (658-695)||(10953499-10953536)
chr2 (592-625)||(14990878-14990911)


Alignment Details
Target: chr5 (Bit Score: 844; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 844; E-Value: 0
Query Start/End: Original strand, 10 - 945
Target Start/End: Original strand, 5269929 - 5270866
Alignment:
Q  10 catcatcaaaatgaagagcaaatgattgttttatttcaaataaatacaaagagacgaaactgttattgatggtttgtaaactggtggccatggcctttga 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5269929 catcatcaaaatgaagagcaaatgattgttttatttcaaataaatacaaaaagacgaaactgttattgatggtttgtaaactggtggccatggcctttga 5270028  T
Q  110 ttgcggaaacttccttccttcattggtcacaaatacataaaattatgactataagagcaaaatcttccaatacttaaaacaagaaaggaaatgacataga 209  Q
    |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5270029 ttgcggaaacttccttccttcattggtcacaaatacataaaagtacgactataagagcaaaatcttccgatacttaaaacaagaaaggaaatgacataga 5270128  T
Q  210 aagaccctaaattatggagtgttgtgacactaggtgcatctttctagctaaccatatctgaagggagggataagtaaatacaacctacatgctgttacat 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5270129 aagaccctaaattatggagtgttgtgacactaggtgcatctttctagctaaccatatctgaagggagggataagtaaatacaacctacatgctgttacat 5270228  T
Q  310 tcgtctatgatatacnnnnnnnccctgttttgagggaaataaactggtattccttactctaatgatactacctaccaagcaagacaaaagttcccagagt 409  Q
    |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5270229 tcgtctatgatatactttttttccctgttttgagggaaataaactggtattccttactctaatgatactacctaccaagcaagacaaaagttcccagagt 5270328  T
Q  410 aaaatgaaacgtggtaatcttacgacacatgcgagtcatatctcaattcaatacaaaactgaatctaaacatctaaatgatacgaatctctaggcttatc 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5270329 aaaatgaaacgtggtaatcttacgacacatgcgagtcatatctcaattcaatacaaaactgaatctaaacatctaaatgatacgaatctctaggcttatc 5270428  T
Q  510 tattttggatatgaatctcatcttgaatacaataccacaattcactatgatgaatcatgaatccatgattcattcaaataaatcactacctaaacttagt 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5270429 tattttggatatgaatctcatcttgaatacaataccacaattcactatgatgaatcatgaatccatgattcattcaaataaatcactacctaaacttagt 5270528  T
Q  610 gcagctagccccttttgtcaactttgtataactaaccaaccactattgttttctcatttgatttatgacttgagccttgaattattctgaagttcatata 709  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5270529 gcagctagccccttttgtcaactttgtataactaaccaaccactattcttttctcatttgatttatgacttgaaccttgaattattctgaagttcatata 5270628  T
Q  710 tgatataccaacttataattctgctttgtcacttgtttttacttaaaaatgttcc-ttttatcagtaatgcatcctaggattcataataagatctgattc 808  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  5270629 tgatataccaacttataattctgctatgtcacttgtttttacttaaaaatgttcctttttatcagtaatgcatcctaggattcataataagatctgattc 5270728  T
Q  809 acaaattcnnnnnnncaagtcttctaattcataatctaaatctcgatttgataaccatggaaat-gaatacttataaataatgcataaaaatcaagactt 907  Q
    ||||||||       |||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  5270729 acaaattcaaaaaagcaagtcttctaattcacaatctaaatctcgatttgataacaatggaaatggaatacttataaataatgcataaaaatcaagactt 5270828  T
Q  908 tgagtcaaaaacttgaaaattcccatatgtaacacaac 945  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5270829 tgagtcaaaaacttgaaaattcccatatgtaacacaac 5270866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 993 - 1122
Target Start/End: Original strand, 5270875 - 5271004
Alignment:
Q  993 aacaattcttagacagacttactttctgtcccgaccgaaatccggattaacagggcccttatcaaaacaaccatagtaaaggctacgaatttttatgaaa 1092  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||    
T  5270875 aacaattcttagacagacttactttctgtcccgaccgaactccggattaacaggggccttatcaaaacaacccaagtaaaggctacgaatttttatgaaa 5270974  T
Q  1093 aattgacatgcagaaataattcaattcaat 1122  Q
    |||||||||||||| |||||| ||||||||    
T  5270975 aattgacatgcagagataattaaattcaat 5271004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 645 - 749
Target Start/End: Original strand, 29161127 - 29161231
Alignment:
Q  645 ccaaccactattgttttctcatttgatttatgacttgagccttgaattattctgaagttcatatatgatataccaacttataattctgctttgtcacttg 744  Q
    ||||||||| || |||| ||||||||  |||||| ||| |||||||||||| ||| |||||||||||||||| || ||| ||||| || | ||||| |||    
T  29161127 ccaaccacttttcttttgtcatttgacatatgacatgaaccttgaattattttgaggttcatatatgatatatcagcttttaattttgttatgtcatttg 29161226  T
Q  745 ttttt 749  Q
    |||||    
T  29161227 ttttt 29161231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 1e-19; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 646 - 760
Target Start/End: Complemental strand, 30284507 - 30284393
Alignment:
Q  646 caaccactattgttttctcatttgatttatgacttgagccttgaattattctgaagttcatatatgatataccaacttataattctgctttgtcacttgt 745  Q
    |||||||| || |||| ||||||||| ||||||||||  |||| |||||| ||| |||||||||||||||| ||| || ||| | || | ||||||||||    
T  30284507 caaccacttttattttgtcatttgatatatgacttgattcttgcattattttgatgttcatatatgatatatcaatttgtaaatttgttatgtcacttgt 30284408  T
Q  746 ttttacttaaaaatg 760  Q
    |||||||||||||||    
T  30284407 ttttacttaaaaatg 30284393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 658 - 745
Target Start/End: Original strand, 30051670 - 30051757
Alignment:
Q  658 ttttctcatttgatttatgacttgagccttgaattattctgaagttcatatatgatataccaacttataattctgctttgtcacttgt 745  Q
    |||| ||||||||| ||| ||||||  ||||||||||| |||  ||||||||||||||| ||||| |||||| || | ||||||||||    
T  30051670 ttttatcatttgatatataacttgaatcttgaattattttgagattcatatatgatatatcaactaataattttgttgtgtcacttgt 30051757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 663 - 757
Target Start/End: Complemental strand, 11207528 - 11207434
Alignment:
Q  663 tcatttgatttatgacttgagccttgaattattctgaagttcatatatgatataccaacttataattctgctttgtcacttgtttttacttaaaa 757  Q
    |||||||||||||||  |||  ||| |||||||  || ||||||||||| |||| |||| ||||||| ||||   ||||||||||||||||||||    
T  11207528 tcatttgatttatgagatgaatcttaaattatttggaggttcatatatggtatatcaacctataattttgctacatcacttgtttttacttaaaa 11207434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 426 - 467
Target Start/End: Complemental strand, 22759071 - 22759030
Alignment:
Q  426 atcttacgacacatgcgagtcatatctcaattcaatacaaaa 467  Q
    ||||||||| ||||||||||||||||||||||| ||||||||    
T  22759071 atcttacgatacatgcgagtcatatctcaattcgatacaaaa 22759030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 703 - 762
Target Start/End: Complemental strand, 35578349 - 35578290
Alignment:
Q  703 tcatatatgatataccaacttataattctgctttgtcacttgtttttacttaaaaatgtt 762  Q
    |||| ||||||||| |||||||||||| || | |||||| ||||||||||| ||||||||    
T  35578349 tcatgtatgatatatcaacttataattttgttatgtcacgtgtttttactttaaaatgtt 35578290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 658 - 761
Target Start/End: Original strand, 42869167 - 42869270
Alignment:
Q  658 ttttctcatttgatttatgacttgagccttgaattattctgaagttcatatatgatataccaacttataattctgctttgtcacttgtttttacttaaaa 757  Q
    |||| |||||| ||||||||||| |  ||| |||||||  |||| || ||||||||||| |||||||||||| || | ||| |||| | |||| ||||||    
T  42869167 ttttatcatttcatttatgacttaaaacttcaattatttagaagctcgtatatgatatatcaacttataattttgatatgttacttatctttaattaaaa 42869266  T
Q  758 atgt 761  Q
    ||||    
T  42869267 atgt 42869270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 1e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 566 - 729
Target Start/End: Original strand, 5912577 - 5912737
Alignment:
Q  566 atgaatccatgattcattcaaataaatcactacctaaacttagtgcagctagcccct--tttgtcaactttgtataactaaccaaccactattgttttct 663  Q
    |||||||| ||||||||||||   ||||||||||||||||||||| ||  |||| ||  |||||||||||||||||||    ||||| || || |||| |    
T  5912577 atgaatcc-tgattcattcaatcgaatcactacctaaacttagtgtagtcagccactattttgtcaactttgtataac----caaccccttttcttttgt 5912671  T
Q  664 catttgatttatgacttgagccttgaattattctgaagttcatatatgatataccaacttataatt 729  Q
    |||||||| ||| | ||||  ||||||||||| ||| |||||||||| ||||| || |||||||||    
T  5912672 catttgatatataatttgaatcttgaattattttgaggttcatatataatatatcatcttataatt 5912737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 642 - 762
Target Start/End: Original strand, 24188092 - 24188211
Alignment:
Q  642 taaccaaccactattgttttctcatttgatttatgacttgagccttgaattattctgaagttcatatatgatataccaacttataattctgctttgtcac 741  Q
    |||||||||||| ||  ||| ||||||||||||  | ||||| ||||| | ||| |||  ||| ||||||||||| |||||||||||| || | ||||||    
T  24188092 taaccaaccactttttctttttcatttgatttaatatttgagtcttgact-attttgagtttcttatatgatatatcaacttataattttgttgtgtcac 24188190  T
Q  742 ttgtttttacttaaaaatgtt 762  Q
    ||||||||| | |||||||||    
T  24188191 ttgtttttattcaaaaatgtt 24188211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 689 - 758
Target Start/End: Original strand, 5958671 - 5958740
Alignment:
Q  689 aattattctgaagttcatatatgatataccaacttataattctgctttgtcacttgtttttacttaaaaa 758  Q
    ||||||| ||| |||  ||||| ||||| ||| |||||||| |||||||||| |||||||||||||||||    
T  5958671 aattattttgaggtttgtatataatatatcaatttataattttgctttgtcatttgtttttacttaaaaa 5958740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 663 - 751
Target Start/End: Original strand, 38868019 - 38868107
Alignment:
Q  663 tcatttgatttatgacttgagccttgaattattctgaagttcatatatgatataccaacttataattctgctttgtcacttgtttttac 751  Q
    |||||||||||| ||||||   ||||||||||| |||  ||||| ||||||||| ||||||||||||  |||   ||||||||||||||    
T  38868019 tcatttgatttaggacttggttcttgaattattttgagattcatgtatgatatatcaacttataatttggctacatcacttgtttttac 38868107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 663 - 759
Target Start/End: Complemental strand, 48433257 - 48433161
Alignment:
Q  663 tcatttgatttatgacttgagccttgaattattctgaagttcatatatgatataccaacttataattctgctttgtcacttgtttttacttaaaaat 759  Q
    ||||||||||| ||||||||  |||||||| || ||| |||| ||||||||||| ||||||||| || |||   |||||||||||||||||| ||||    
T  48433257 tcatttgatttttgacttgaatcttgaattcttttgaggttcgtatatgatatatcaacttatatttttgccaagtcacttgtttttacttagaaat 48433161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 658 - 759
Target Start/End: Complemental strand, 48433417 - 48433316
Alignment:
Q  658 ttttctcatttgatttatgacttgagccttgaattattctgaagttcatatatgatataccaacttataattctgctttgtcacttgtttttacttaaaa 757  Q
    |||| ||||||||||| ||||||||  |||||||| || ||| |||| ||||||||||| | ||||||| || |||   |||||||||||||||||| ||    
T  48433417 ttttgtcatttgatttttgacttgaatcttgaattcttttgaggttcgtatatgatatatctacttatatttttgccaagtcacttgtttttacttagaa 48433318  T
Q  758 at 759  Q
    ||    
T  48433317 at 48433316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 685 - 761
Target Start/End: Complemental strand, 33008580 - 33008504
Alignment:
Q  685 cttgaattattctgaagttcatatatgatataccaacttataattctgctttgtcacttgtttttacttaaaaatgt 761  Q
    |||||||||||  || |||||||||||||||| |||||||||  |  | | |||||||||||||||||| |||||||    
T  33008580 cttgaattatttcgaggttcatatatgatatatcaacttatatattagttatgtcacttgtttttactttaaaatgt 33008504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 665 - 750
Target Start/End: Complemental strand, 33580861 - 33580774
Alignment:
Q  665 atttgatttatgacttgagcct--tgaattattctgaagttcatatatgatataccaacttataattctgctttgtcacttgttttta 750  Q
    ||||||||||||||||||  ||  ||||| ||| |||||||||||||||| |||||| ||||||||| || | |||| ||||||||||    
T  33580861 atttgatttatgacttgaatctcttgaatcattttgaagttcatatatgacataccagcttataattttgttatgtcccttgttttta 33580774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 642 - 760
Target Start/End: Original strand, 6421573 - 6421691
Alignment:
Q  642 taaccaaccactattgttttctcatttgatttatgacttgagccttgaattattctgaagttcatatatgatataccaacttataattctgctttgtcac 741  Q
    |||||||||||| || |||  |||||||||||||||| | |  |  |||| ||| ||||||| |||||| || || |  ||||| ||| || | ||||||    
T  6421573 taaccaaccacttttctttggtcatttgatttatgacatcaatcaagaatcattttgaagtttatatataatgtatcgccttattattttgttatgtcac 6421672  T
Q  742 ttgtttttacttaaaaatg 760  Q
    |||||||||||||||||||    
T  6421673 ttgtttttacttaaaaatg 6421691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 644 - 713
Target Start/End: Original strand, 6349483 - 6349552
Alignment:
Q  644 accaaccactattgttttctcatttgatttatgacttgagccttgaattattctgaagttcatatatgat 713  Q
    |||||||||| || |||| ||||||||||||||||||||  | || |||||| ||| ||||||| |||||    
T  6349483 accaaccacttttcttttttcatttgatttatgacttgaatcatgtattattttgatgttcatacatgat 6349552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 547 - 716
Target Start/End: Original strand, 52750110 - 52750277
Alignment:
Q  547 caattcactatgatgaatcatgaatccatgattcattcaaataaatcactacctaaacttagtgcagctagcccctttt-----gtcaactttgtataac 641  Q
    ||||||||| ||||||||| |||   | |||||||||| ||| ||||||||| ||||||||||| ||| | || |||||     ||||| ||||||||||    
T  52750110 caattcactgtgatgaatcgtga---cctgattcattctaatgaatcactacataaacttagtgtagccaaccactttttacttgtcaattttgtataac 52750206  T
Q  642 taaccaaccactattgttttctcatttgatttatgacttgagccttgaattattctgaagttcatatatgatata 716  Q
        |||||||| || |||| ||||||||| | | ||||||  ||||||||| | ||| ||||||||||||||||    
T  52750207 ----caaccacttttcttttgtcatttgatatttaacttgaatcttgaattagtttgaggttcatatatgatata 52750277  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 663 - 760
Target Start/End: Original strand, 20505163 - 20505263
Alignment:
Q  663 tcatttgatttatgacttgagccttgaattattctgaagttcatatatgat---ataccaacttataattctgctttgtcacttgtttttacttaaaaat 759  Q
    ||||||||| ||| |||| |  ||||||||||  ||| |||||||||||||   ||| |||||||||| | || ||||||||||| ||||| ||||||||    
T  20505163 tcatttgatatataactttaatcttgaattatattgaggttcatatatgatgatatatcaacttataactttgttttgtcacttggttttaattaaaaat 20505262  T
Q  760 g 760  Q
    |    
T  20505263 g 20505263  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 701 - 758
Target Start/End: Original strand, 3727278 - 3727335
Alignment:
Q  701 gttcatatatgatataccaacttataattctgctttgtcacttgtttttacttaaaaa 758  Q
    |||| ||||||||||| || |||||||||  ||| |||||||||||||||||| ||||    
T  3727278 gttcgtatatgatatatcagcttataatttagctatgtcacttgtttttactttaaaa 3727335  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 663 - 761
Target Start/End: Original strand, 7379647 - 7379745
Alignment:
Q  663 tcatttgatttatgacttgagccttgaattattctgaagttcatatatgatataccaacttataattctgctttgtcacttgtttttacttaaaaatgt 761  Q
    ||||||||||||||||||||  || |||||||   || ||||||||||||||||||| ||||  ||| ||   ||||||| |||||||| |||||||||    
T  7379647 tcatttgatttatgacttgaatctagaattatatagaggttcatatatgatataccagcttacgattttgacgtgtcactggtttttacataaaaatgt 7379745  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 665 - 729
Target Start/End: Complemental strand, 4433135 - 4433071
Alignment:
Q  665 atttgatttatgacttgagccttgaattattctgaagttcatatatgatataccaacttataatt 729  Q
    ||||||||||||||||||  ||||||||||| ||| |||||||||||  || |||||| ||||||    
T  4433135 atttgatttatgacttgaatcttgaattattttgaggttcatatatggcatgccaactaataatt 4433071  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 708 - 759
Target Start/End: Original strand, 30603465 - 30603516
Alignment:
Q  708 tatgatataccaacttataattctgctttgtcacttgtttttacttaaaaat 759  Q
    ||||||||| ||||||||| || |||| ||||| ||||||||||||||||||    
T  30603465 tatgatatatcaacttatagttttgctatgtcatttgtttttacttaaaaat 30603516  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 664 - 729
Target Start/End: Complemental strand, 32847577 - 32847512
Alignment:
Q  664 catttgatttatgacttgagccttgaattattctgaagttcatatatgatataccaacttataatt 729  Q
    |||||| | ||||||||||  ||||||||||| ||| | |||||||||||||| || |||||||||    
T  32847577 catttgttatatgacttgaatcttgaattattttgaggctcatatatgatatatcagcttataatt 32847512  T

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Target: chr2 (Bit Score: 31; Significance: 0.0000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 663 - 757
Target Start/End: Complemental strand, 15396196 - 15396103
Alignment:
Q  663 tcatttgatttatgacttgagccttgaattattctgaagttcatatatgatataccaacttataattctgctttgtcacttgtttttacttaaaa 757  Q
    |||||||||||| || |||| | |||||||||| ||| |||| ||||||||||| || |||| | || |||| || || ||||||||||||||||    
T  15396196 tcatttgatttacgatttgaacattgaattattttgaggttc-tatatgatatatcagcttacagttttgctatgccatttgtttttacttaaaa 15396103  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 658 - 695
Target Start/End: Complemental strand, 10953536 - 10953499
Alignment:
Q  658 ttttctcatttgatttatgacttgagccttgaattatt 695  Q
    |||||||||||||||||||||||||  |||||||||||    
T  10953536 ttttctcatttgatttatgacttgaatcttgaattatt 10953499  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 592 - 625
Target Start/End: Complemental strand, 14990911 - 14990878
Alignment:
Q  592 tcactacctaaacttagtgcagctagcccctttt 625  Q
    |||||||||||||||||||||||||||| |||||    
T  14990911 tcactacctaaacttagtgcagctagccactttt 14990878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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