View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18196_low_10 (Length: 561)
Name: NF18196_low_10
Description: NF18196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18196_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 39 - 545
Target Start/End: Original strand, 52948497 - 52949005
Alignment:
| Q |
39 |
ggagccttgacggtgaagaataagacaaaagtctatgacaaatatagaaaaattcttatcaagccnnnnnnnaacacatttttcttattgatcaaaattt |
138 |
Q |
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| T |
52948497 |
ggagccttgacggtgaagaataagacaaaagtctatgacaaatatagaaaaattcttatcaagcctttttttaacacatttttcttattgatcaaaattt |
52948596 |
T |
|
| Q |
139 |
atgaatctacttcaatttcattggataaaaagtgttttgaagctgcaatttgaacaaagattatagtagattatcacagccagaatttcatatataaggt |
238 |
Q |
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| T |
52948597 |
atgaatctacttcaatttcattggataaaatgtgttttgaggctgcaatttgaacaaagattatagtagattatcacagccagaaattcatatataaggt |
52948696 |
T |
|
| Q |
239 |
aaaacatgagtttaactttaannnnnnnnnnnnnn-cattaaataaagagtaggagatttgactagaaatttgctatttgttgtactataattcaagaaa |
337 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
52948697 |
gaaacatgagtttaactttaatttttttgtttttttcattaaataaagagtaggagatttgactagaaatttgctatttgttgtactataattcaacaaa |
52948796 |
T |
|
| Q |
338 |
taaccataaaacagattaggcatctaccgtaaa-gagaaaaaggttcaccagggtttattttagtcaaattgtagttgacaccttgtaaaaaatgagaga |
436 |
Q |
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| T |
52948797 |
taaccataaaacagattaggcatctaccgtaaaagagaaaaaggttcaccagggtttattttagtcaaattgtagttgacacctagtaaaaaatgagaga |
52948896 |
T |
|
| Q |
437 |
aaaatgattgacaatgatagttgttacatgccagaagttcttctcaagaaacttcggtgataattgatcacacaagtaactaaaaagagctggtgcatcg |
536 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52948897 |
aaaatgattgacaatgatagttgttacatgccagaagttcttctcaagaaacttcggtgataattgatcacacaagtaactaaaaagagctggtacatcg |
52948996 |
T |
|
| Q |
537 |
atgctaact |
545 |
Q |
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| T |
52948997 |
atgctaact |
52949005 |
T |
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