View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18196_low_11 (Length: 557)
Name: NF18196_low_11
Description: NF18196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18196_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 468; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 19 - 546
Target Start/End: Complemental strand, 6010565 - 6010038
Alignment:
| Q |
19 |
acattgatcctcgatgaaaaaatgaacnnnnnnnntcatgattaagatttcaatttttcttaattaaataataattaattaatgtatatttgttttgttt |
118 |
Q |
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| T |
6010565 |
acattgatcctcgatgaaaaaatgaacaaaaaaaatcatgattaagatttcaatttttcttaattaaataataattaattaatgtgtatttgttttgttt |
6010466 |
T |
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| Q |
119 |
cgttattctggatttgatcatcatcattattaataactgtgacactaatgatcattttacctgtccaggtggaatttgaactctatcgcttggattgatt |
218 |
Q |
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| T |
6010465 |
cgttattcaggatttgattatcatcattattaataactgtgacactaatgatcattttacctgtccaggtggaatttgaactctatcgcttggattgatt |
6010366 |
T |
|
| Q |
219 |
tgaactctgtctcgaggttattcaggatttgattgttatagcatataacgaaggattattgtgagaagcgcacattgttgttgttttggtataaaagttg |
318 |
Q |
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| T |
6010365 |
tgaactctgtctcgaggttattcaggatttgattgttatagcatataacgaaggattatagcgagaagcgcacattgttgttgttttggtataaaagttg |
6010266 |
T |
|
| Q |
319 |
agtctaattgttggtattgagaatttgaggatatattaggaggggaaagaacaatgtctgtgaggagtgaacaccatcatacggttcctctttcggttct |
418 |
Q |
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| T |
6010265 |
agtctaattgttggtattgagaatttgaggatatattacgaggggaaagaacaatgtctgtgaggagtgaacaccatcataccgttcctctttcggttct |
6010166 |
T |
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| Q |
419 |
attgaagcgggagttgatgagcgagaaaattgagaagcctgagattgttcatggtcaagctggacaaagtaagaaaggagaggatttcgctttgttaaag |
518 |
Q |
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| T |
6010165 |
attgaagcgggagttgatgagcgagaaaattgagaagcctgagattgttcatggtcaagctggacagagtaagaaaggagaggatttcgcgttgttaaag |
6010066 |
T |
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| Q |
519 |
tctgattgtcagaggatggttggtgatg |
546 |
Q |
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| T |
6010065 |
tctgattgtcagaggatggttggtgatg |
6010038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 293 - 406
Target Start/End: Complemental strand, 19471712 - 19471604
Alignment:
| Q |
293 |
ttgttgttgttttggtataaaagttgagtctaattgttggtattgagaatttgaggatatattaggaggggaaagaacaatgtctgtgaggagtgaacac |
392 |
Q |
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| T |
19471712 |
ttgttgtcgttttggtataaaagtcaagtctagttgttagtattgagaatttgag-----tttaggagggcaaagaacagtgtctgctaggagtgaacgc |
19471618 |
T |
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| Q |
393 |
catcatacggttcc |
406 |
Q |
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| T |
19471617 |
catcaaacggttcc |
19471604 |
T |
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