View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18196_low_13 (Length: 523)
Name: NF18196_low_13
Description: NF18196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18196_low_13 |
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| [»] scaffold0511 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 12 - 505
Target Start/End: Original strand, 42464667 - 42465157
Alignment:
| Q |
12 |
ataattcttacctaaacaaatgcttcagaagttacaataatatttattctctattattaggtcgatactaccattttgggtcttgatgatgaaagagcaa |
111 |
Q |
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| T |
42464667 |
ataattcttacctaaacaaatgcttcagaagttacaataatatttattctctattattaggtcgatactaccattttgggtcttgatgatgaaagagcaa |
42464766 |
T |
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| Q |
112 |
aggaaatgccttttattgctagcatgggtatatatgttatcagcaaaaatgtgatgttagacttgcttcgcgaccaatttcctggtgcaaatgactttgg |
211 |
Q |
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| T |
42464767 |
aggaaatgccttttattgctagcatgggtatatatgttatcagcaaaaatgtgatgttagacctgcttcgcgaccaatttcctggtgcaaatgactttgg |
42464866 |
T |
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| Q |
212 |
gagtgaagtgattcctggtgctacttccatcggaaagagagtatgtgttctttctagttgttcaatttcaagaaactttgacttttttctaaaacctcat |
311 |
Q |
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| T |
42464867 |
gagtgaagtgattcctggtgctacttccattggaaagagagtatgtgttctttctagttgttcaatttcaagaaactttgacttttttctaaaacctcat |
42464966 |
T |
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| Q |
312 |
tacgataaaggtcgatgcttatatttgttggaatttccaaaagttgaactttataatcttgctataaaacattcatagcttaaatctcaggatcttgagg |
411 |
Q |
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| T |
42464967 |
tacgataaaggtcaatgcttatat---ttggagtttccaactgttgaactttataatcttgctataaaacattcatagcttaaatctcaggatcttgagg |
42465063 |
T |
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| Q |
412 |
tagtttttgtgaaaaattcacaggtgcaagcttacttatatgatggctactgggaagacattggtaccattgaggctttctataatgcaaatct |
505 |
Q |
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| T |
42465064 |
tagtttttgtgaaaaattcacaggtgcaagcttacttatatgatggctactgggaagacattggtaccattgaggctttctataatgcaaatct |
42465157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 95; Significance: 3e-46; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 66 - 232
Target Start/End: Original strand, 37078525 - 37078691
Alignment:
| Q |
66 |
tattaggtcgatactaccattttgggtcttgatgatgaaagagcaaaggaaatgccttttattgctagcatgggtatatatgttatcagcaaaaatgtga |
165 |
Q |
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|||||||| |||||||| ||||||||||| ||||| || ||||||||||||||||||| ||||||||| ||||||||||||||| | |||||| |||||| |
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| T |
37078525 |
tattaggttgatactactattttgggtctcgatgacgagagagcaaaggaaatgccttatattgctagtatgggtatatatgttgtaagcaaacatgtga |
37078624 |
T |
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| Q |
166 |
tgttagacttgcttcgcgaccaatttcctggtgcaaatgactttgggagtgaagtgattcctggtgc |
232 |
Q |
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| T |
37078625 |
tgctagatctgctccgcgacaagtttcctggtgcaaacgactttgggagtgaagttattcctggtgc |
37078691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 419 - 505
Target Start/End: Complemental strand, 22761341 - 22761255
Alignment:
| Q |
419 |
tgtgaaaaattcacaggtgcaagcttacttatatgatggctactgggaagacattggtaccattgaggctttctataatgcaaatct |
505 |
Q |
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| T |
22761341 |
tgtgaaaaattcatacgtgtaagcttacttatatgatggctaccgggaagacattggtatcgttgaggctttcaataatgcaaatct |
22761255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 433 - 505
Target Start/End: Original strand, 37078820 - 37078892
Alignment:
| Q |
433 |
aggtgcaagcttacttatatgatggctactgggaagacattggtaccattgaggctttctataatgcaaatct |
505 |
Q |
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| T |
37078820 |
aggtgcaagcttatttatacgatggatactgggaagacatcggtacaattgaggctttctataatgcaaatct |
37078892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 363 - 498
Target Start/End: Complemental strand, 42301153 - 42301020
Alignment:
| Q |
363 |
tataatcttgctataaaacattcatagcttaaatctcaggatcttgaggtagtttttgtgaaaaattcacaggtgcaagcttacttatatgatggctact |
462 |
Q |
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| T |
42301153 |
tataatcttgctttggaactttcatagcttaaatatcaagatcta-aggtaatttt-gtgaaaaattcataggtataagcttacttatatgatggctacc |
42301056 |
T |
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| Q |
463 |
gggaagacattggtaccattgaggctttctataatg |
498 |
Q |
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| T |
42301055 |
gggaagacattgataccattgaggcattctataatg |
42301020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 419 - 505
Target Start/End: Original strand, 1065 - 1151
Alignment:
| Q |
419 |
tgtgaaaaattcacaggtgcaagcttacttatatgatggctactgggaagacattggtaccattgaggctttctataatgcaaatct |
505 |
Q |
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| T |
1065 |
tgtgaaaaatttataggtgtaagcttacttatatgatggctactaggaagacattggtatcgttgaggctttcaataatgcaaatct |
1151 |
T |
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Target: chr6 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 419 - 505
Target Start/End: Original strand, 18317081 - 18317167
Alignment:
| Q |
419 |
tgtgaaaaattcacaggtgcaagcttacttatatgatggctactgggaagacattggtaccattgaggctttctataatgcaaatct |
505 |
Q |
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| T |
18317081 |
tgtgaaaaatttataggtgtaagcttacttatatgatggctactaggaagacattggtatcgttgaggctttcaataatgcaaatct |
18317167 |
T |
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