View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18196_low_14 (Length: 491)
Name: NF18196_low_14
Description: NF18196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18196_low_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 13 - 475
Target Start/End: Complemental strand, 976267 - 975808
Alignment:
| Q |
13 |
aatattttacgcgacaaattcaaataaaacttaccattctctattttannnnnnngaataatcgaaatccctaatctctataaaacaaaaactacattta |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
976267 |
aatattttacgcgacaaattcaaataaaacttaccattctctattttatttttttgaataatcgaaatccctattctctataaaacaaaaactacattta |
976168 |
T |
|
| Q |
113 |
atcataaatatgtcacaaaaaatcatcaccttgttattattattacttttaatttaaaatgtctcatattactgacgtacatgatcagaaag-attgcgg |
211 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
976167 |
atcataaatatgtcacaaaaaatcgtcaccttgttattattattacttttaatttaaaatgtctcatattactgacgtatatgatcagaaagaattgcgg |
976068 |
T |
|
| Q |
212 |
tcaacaatgtagtttgaaag--atcgaaaatcctactttattgacaaccctcactcatacttaccttcgagagatttggcttgatatcattaacattact |
309 |
Q |
| |
|
||||||||||||||| |||| ||||||| |||||||||||||||||||| | ||||||||| |||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
976067 |
tcaacaatgtagtttaaaagacatcgaaagtcctactttattgacaaccccctctcatacttgcctttgagagatttggcttgatatcattagcattact |
975968 |
T |
|
| Q |
310 |
atataattacatagtggttaatggttatgccattgccgattctatagcttttagcattatccacaaccacattcatcaagctactttggatataatttca |
409 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
975967 |
atataattacatagtggttaatggtta------tgccgattctatagcttttagcattatccacaaccacattcatcaagctactttggatataatttca |
975874 |
T |
|
| Q |
410 |
aacttggcaaaaataaactcaaaaatagaaattaaaagtgtttttatagcaatgttatcttctacg |
475 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
975873 |
aacttggcaaaaataagctcaaaaatagaaattaaaagtgtttttatagcaatgttatcttctacg |
975808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University