View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18196_low_15 (Length: 482)
Name: NF18196_low_15
Description: NF18196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18196_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 390; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 13 - 466
Target Start/End: Original strand, 32866086 - 32866540
Alignment:
| Q |
13 |
atcatgatcattcacatttgatttacgacctaatccattcttagagtcacgtgtgaatgtcaaattgaagactaaattgcattcnnnnnnnaatttcttc |
112 |
Q |
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| T |
32866086 |
atcatgatcattcacatttgatttacgacctaatccattcttagagtcacgtgtgaatgtcaaattgaagactgaattgcattctttttttaattttttc |
32866185 |
T |
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| Q |
113 |
tgccaatcactttactcaattgtatttaggtccaagtaaagggtatggtgtgcccaaatcaaacgagtgttggttggacccttcaatgtatgtctttttt |
212 |
Q |
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| T |
32866186 |
tgccaatcactttgctcaattgtatttaggtccaagtaaagggtatggtgtgcccaaatcaaacgagtgttggttggacccttcaatgtgtgtctttttt |
32866285 |
T |
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| Q |
213 |
aaataaaaaattgggacagaggggattattttgttaattaaagtgacattaatcagcatttcatagctatttttaagcgaatttcaactgaataacttaa |
312 |
Q |
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| T |
32866286 |
aaataaaaaattgggacagaggggattattttgttaattaaagtgacattaatcatcattttatagttatatttaagcgaatttcaactgaataacttaa |
32866385 |
T |
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| Q |
313 |
ggttacaaaactaatcacataaaatgatgtgatgttgcctaagcacattttgattcaattataagagataaa-tatacgggaaaagcctcctaaaatttg |
411 |
Q |
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| T |
32866386 |
ggttacaaaactaatcacataaaatgatgtgatgttgcctaagcacattttgattcaattataagagataaagtatacggaaaaagcctcctaaaatttg |
32866485 |
T |
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| Q |
412 |
gatcaagtgtaatattgatgtcgcttttgtgtctatttgtgacacaacatattat |
466 |
Q |
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| T |
32866486 |
gatcaagtgtaatattgatgtcgcttttgtgtctatttgtgacacaacatattat |
32866540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 298 - 462
Target Start/End: Original strand, 32874696 - 32874861
Alignment:
| Q |
298 |
aactgaataacttaaggttacaaaactaatcacataaaatgatgtgatgttgcctaagcacattttgattcaattataagagataaa-tatacgggaaaa |
396 |
Q |
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|||| |||| ||||||||||||| ||||| |||||||||| ||||| ||||| ||||| | |||||||||||||||||| ||||| ||| | | |||| |
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| T |
32874696 |
aactcaatatcttaaggttacaacactaagcacataaaataatgtggtgttgtgtaagctccttttgattcaattataaggtataaagtatgcagaaaaa |
32874795 |
T |
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| Q |
397 |
gcctcctaaaatttggatcaagtgtaatattgatgtcgcttttgtgtctatttgtgacacaacata |
462 |
Q |
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| T |
32874796 |
gcctcctaaaaattgaatcaaatgtaacattgatgtcacttttatgtctatttatgacataacata |
32874861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 377
Target Start/End: Original strand, 32872785 - 32872854
Alignment:
| Q |
308 |
cttaaggttacaaaactaatcacataaaatgatgtgatgttgcctaagcacattttgattcaattataag |
377 |
Q |
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| T |
32872785 |
cttaaggttacaacactaagcacataacataatgtggtgttgtgtaagatcattttgatacaattataag |
32872854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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