View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18196_low_16 (Length: 470)

Name: NF18196_low_16
Description: NF18196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18196_low_16
NF18196_low_16
[»] scaffold0328 (1 HSPs)
scaffold0328 (206-457)||(2764-3015)
[»] chr6 (1 HSPs)
chr6 (307-434)||(20072979-20073105)
[»] chr7 (1 HSPs)
chr7 (264-322)||(6628212-6628271)
[»] chr8 (1 HSPs)
chr8 (200-251)||(19705890-19705939)
[»] chr5 (1 HSPs)
chr5 (200-251)||(19004970-19005019)


Alignment Details
Target: scaffold0328 (Bit Score: 184; Significance: 2e-99; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 206 - 457
Target Start/End: Original strand, 2764 - 3015
Alignment:
Q  206 tttatttctctctgggttgttatcatgtgagagtttatttctctctaggtatgttatgatttgtgagagtttatttctttctgtgaagttttatttatgt 305  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||| | || |||||||||||||     
T  2764 tttatttctctctggattgttatcatgtgagagtttatttctctctagacatgttatgattagtgagagtttatttctttatatggagttttatttatgg 2863  T
Q  306 gagtttatttctctctgggtatgatatttttgtggagtttatttctccctgtgtgtttgaagcttttatgtgaggttgggtatttccaaattctgttgta 405  Q
    || |||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  2864 gattttatttctccctgggtatgatatttttgtagagtttatttctccttgtgtgtttgaagcttttatgtgaggctgggtatttccaaattctattgta 2963  T
Q  406 gtatgcctctgatgtttttggtgaagtttattcttgtgcgttattttcattt 457  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||| ||||    
T  2964 gtatgcctctggtgtttttgctgaagtttattcttgtgcgttatttttattt 3015  T

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Target: chr6 (Bit Score: 64; Significance: 8e-28; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 307 - 434
Target Start/End: Original strand, 20072979 - 20073105
Alignment:
Q  307 agtttatttctctctgggtatgatatttttgtggagtttatttctccctgtgtgtttgaagcttttatgtgaggttgggtatttccaaattctgttgtag 406  Q
    ||||||||||||  || ||||| |||||||||||||||||||||||||| ||||||||||| |||| | ||||| ||| ||||||||| ||| | |||||    
T  20072979 agtttatttctcattgagtatgttatttttgtggagtttatttctccctatgtgtttgaag-ttttctttgaggctggatatttccaatttccgctgtag 20073077  T
Q  407 tatgcctctgatgtttttggtgaagttt 434  Q
    || |||||||||||||||||||| ||||    
T  20073078 taagcctctgatgtttttggtgatgttt 20073105  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 264 - 322
Target Start/End: Original strand, 6628212 - 6628271
Alignment:
Q  264 atttgtgagagtttatttctttctg-tgaagttttatttatgtgagtttatttctctctg 322  Q
    |||| |||||||||||||||||||| |||||||||| || || |||||||||||||||||    
T  6628212 atttttgagagtttatttctttctgatgaagttttacttgtgagagtttatttctctctg 6628271  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 251
Target Start/End: Original strand, 19705890 - 19705939
Alignment:
Q  200 tgggagtttatttctctctgggttgttatcatgtgagagtttatttctctct 251  Q
    |||||||||||||||| |||||||| | |  |||||||||||||||||||||    
T  19705890 tgggagtttatttctccctgggttgctgt--tgtgagagtttatttctctct 19705939  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 251
Target Start/End: Original strand, 19004970 - 19005019
Alignment:
Q  200 tgggagtttatttctctctgggttgttatcatgtgagagtttatttctctct 251  Q
    |||||||||||||||| |||| ||| |||  |||||||||||||||||||||    
T  19004970 tgggagtttatttctccctggattgatat--tgtgagagtttatttctctct 19005019  T

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