View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18196_low_17 (Length: 469)
Name: NF18196_low_17
Description: NF18196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18196_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 18 - 453
Target Start/End: Complemental strand, 120058 - 119631
Alignment:
| Q |
18 |
aaacttatgctatgcttttttatcattttagtttctgcttgtatagtgaaatctttttagtcttgctatgcttatgtactacaatttgttaccgtcgttt |
117 |
Q |
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| T |
120058 |
aaacttatgctatgcttttttatcattttagtttctgcttgtatagtgaaatctttttagtcttgctatgcttatgtactacaatttgttaccgtcgttt |
119959 |
T |
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| Q |
118 |
agtgaaatatctccaatcctttaaaatatctactaaatctataatataaaagacaaagtaatctgtgtgatcatggtctgcacatgaaggtgagcagact |
217 |
Q |
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| T |
119958 |
agtgaaatatctccaatcctttaaaatatttactaaatctataatataaaagacaaagtaatctgtgtgatcatggtctgcacatgaaggtgagcagact |
119859 |
T |
|
| Q |
218 |
atttgtatatatccaagtattttattgtggnnnnnnnnnnnnnnnnnnnnngacaccttctgaaatctttacagttactttattttgaaagaagcatata |
317 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
119858 |
atttgtatatatccaagtattttattgtgg--------aaaaaaaaaaaaagacaccttctgaaatctttacagttactttattttgaaagaagcatata |
119767 |
T |
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| Q |
318 |
tccaccaatgataactcatttaactggatttattgattttgatgtttacttacatgacctttgaaaataatagttgtctgttaaaatgagctcttgatga |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
119766 |
tccaccaatgataactcatttaactggatttattgattttgatgtttacttacatgacctttgaaaataatagttgtctgttaaaatgagctattgatga |
119667 |
T |
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| Q |
418 |
gtaagtaaggtgaagtattgtaattttgaagttcat |
453 |
Q |
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| T |
119666 |
gtaagtaaggtgaagtattgtaattttgaagttcat |
119631 |
T |
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