View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18196_low_18 (Length: 460)
Name: NF18196_low_18
Description: NF18196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18196_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 9 - 445
Target Start/End: Complemental strand, 39273219 - 39272783
Alignment:
| Q |
9 |
acatcatcacccattcaagaactctctcaccttgctcagagatgcaatgctatcaacctagctgaaggcttccctgacttccctgctcctctccacatca |
108 |
Q |
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| T |
39273219 |
acatcatcacccattcaagaactctctcaccttgctcagagatgcaatgctatcaacctagctgaaggcttccctgacttccctgctcctctccacatca |
39273120 |
T |
|
| Q |
109 |
aaaacgccgccgtttccgccatcaattccgacctcaaccaatacaggtttttctttttcttcacacacaactcaaactaataatacatttttcaccaatt |
208 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39273119 |
aaaacgccgccgtttccgccattaattccgacctcaaccaatacaggtttttctttttctttacacacaactcaaactaataatacatttttcaccaatt |
39273020 |
T |
|
| Q |
209 |
catagaatctatctactctttgtatttcaaggcatgtgcaaggtatatgtgaacacttggctaagatagtaaaggaaatgcatggtttagatattgattc |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
39273019 |
catagaatctatctactctttgtatttcaaggcatgtgcaaggtatatgtgaacacttggctaagatagtaaaggaaatgcatggtttagatattgactc |
39272920 |
T |
|
| Q |
309 |
tgagacggatgtagctatctgttgtggtcaaactgaggcttttgctgctgcaatctttgcaagtatgctctttattgttttattgttttagttcaagctg |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39272919 |
tgagacggatgtagctatctgttgtggtcaaactgaggcttttgctgctgcaatctttgcaagtatgctctttatagttttattgttttagttcaagctg |
39272820 |
T |
|
| Q |
409 |
acacatacaccgtacacaatatcgacactgatacatt |
445 |
Q |
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||||||||||| ||||||||| ||||||||||||||| |
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| T |
39272819 |
acacatacaccttacacaataccgacactgatacatt |
39272783 |
T |
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