View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18196_low_19 (Length: 439)
Name: NF18196_low_19
Description: NF18196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18196_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 16 - 422
Target Start/End: Complemental strand, 29732429 - 29732023
Alignment:
| Q |
16 |
atggtgaaaatgtgtttgagatgggagataaaggttctcactattttcatgttttctactgataattggattcgccccaaggtcataannnnnnnnnnnc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
29732429 |
atggtgaaaatgtgtttgagatgggagataaaggttctcactattttcatgttttctactgataattggattcgccccaaggtcataatttttttttttc |
29732330 |
T |
|
| Q |
116 |
cctttcgtttatcctgtctcattactaaaaaagccaatataaatannnnnnnnnnnnnnnaggaaatatcaataccatacggtaaattcatgattttgag |
215 |
Q |
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||||| ||| ||||||||||||||||| |||||||||||||| | |||||||||| ||||||||||||||||||||||||||||| |
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| T |
29732329 |
cctttgctttctcctgtctcattactaacaaagccaatataaagatttttttttttat--aggaaatatctataccatacggtaaattcatgattttgag |
29732232 |
T |
|
| Q |
216 |
aaaacattttcactttcaattaaacccttaaacaaatttgccactttatattat---agtatagacattttctgaaaaaacactttattaatatataaag |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
29732231 |
aaaacattttcactttcaattaaacccttaaacaaatttgccactttatattattatagtatagacattttctaaaaaaacactttatta-tatataaag |
29732133 |
T |
|
| Q |
313 |
tgaaaaataatacatatagctccttaggggatatcctatagaaaataaagcatgaagtaatattaatatatttggaatcacatcataattaaataaaatt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29732132 |
tgaaaaataatacatatagctccttaggggatatcctatagaaaataaagcatgaagtaatattaatatatttggaatcacatcataattaaataaaatt |
29732033 |
T |
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| Q |
413 |
acaatagtta |
422 |
Q |
| |
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|||||||||| |
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| T |
29732032 |
acaatagtta |
29732023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 255
Target Start/End: Original strand, 17551934 - 17551967
Alignment:
| Q |
222 |
ttttcactttcaattaaacccttaaacaaatttg |
255 |
Q |
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|||||||||||||||| ||||||||||||||||| |
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|
| T |
17551934 |
ttttcactttcaattatacccttaaacaaatttg |
17551967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 258
Target Start/End: Complemental strand, 28727998 - 28727962
Alignment:
| Q |
222 |
ttttcactttcaattaaacccttaaacaaatttgcca |
258 |
Q |
| |
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|||| ||||||||||| |||||||||||||||||||| |
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| T |
28727998 |
ttttaactttcaattatacccttaaacaaatttgcca |
28727962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 17264190 - 17264226
Alignment:
| Q |
222 |
ttttcactttcaattaaacccttaaacaaatttgcca |
258 |
Q |
| |
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|||||||||||||||| | |||||||||||||||||| |
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| T |
17264190 |
ttttcactttcaattatagccttaaacaaatttgcca |
17264226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 254
Target Start/End: Original strand, 5580480 - 5580512
Alignment:
| Q |
222 |
ttttcactttcaattaaacccttaaacaaattt |
254 |
Q |
| |
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|||||||||||||||| |||||||||||||||| |
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|
| T |
5580480 |
ttttcactttcaattatacccttaaacaaattt |
5580512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 254
Target Start/End: Original strand, 31239035 - 31239067
Alignment:
| Q |
222 |
ttttcactttcaattaaacccttaaacaaattt |
254 |
Q |
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|||||||||||||||| |||||||||||||||| |
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|
| T |
31239035 |
ttttcactttcaattatacccttaaacaaattt |
31239067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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