View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18196_low_20 (Length: 438)

Name: NF18196_low_20
Description: NF18196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18196_low_20
NF18196_low_20
[»] chr8 (7 HSPs)
chr8 (183-423)||(3603072-3603315)
chr8 (16-184)||(3603401-3603568)
chr8 (305-397)||(41999973-42000065)
chr8 (305-393)||(45093130-45093218)
chr8 (311-397)||(14769780-14769866)
chr8 (300-397)||(9215907-9216004)
chr8 (347-397)||(33372929-33372979)
[»] chr2 (3 HSPs)
chr2 (305-397)||(11996061-11996153)
chr2 (305-397)||(42865606-42865698)
chr2 (305-393)||(24126745-24126833)
[»] chr7 (4 HSPs)
chr7 (305-397)||(45034004-45034096)
chr7 (305-397)||(46045596-46045688)
chr7 (305-398)||(38110999-38111092)
chr7 (305-397)||(8035400-8035492)
[»] chr5 (2 HSPs)
chr5 (305-397)||(14024624-14024716)
chr5 (305-397)||(32386177-32386269)
[»] chr4 (3 HSPs)
chr4 (305-397)||(1369123-1369215)
chr4 (305-397)||(28945694-28945786)
chr4 (305-397)||(36859134-36859226)
[»] chr1 (2 HSPs)
chr1 (305-397)||(6293705-6293797)
chr1 (305-396)||(28705680-28705771)
[»] chr3 (1 HSPs)
chr3 (298-369)||(1182170-1182241)


Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 183 - 423
Target Start/End: Complemental strand, 3603315 - 3603072
Alignment:
Q  183 gatgaagatatattgatcctagaggtctccaaaatagtcgctaattcacttagtgatcgattttctccatttagtgaccaatttttcggtttctaaaacc 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  3603315 gatgaagatatattgatcctagaggtctccaaaatagtcgctaattcacttagtgatcgattttctccatttagtgaccaatttttcggtttctaaaact 3603216  T
Q  283 agttttcttgtagtgcctcattaaaatgaaactatatacatcggttggatgccacc---tttgattggttgagttaagctcaattgtgatgatgtttgga 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  3603215 agttttcttgtagtgcctcattaaaatgaaactatatacatcggttggatgccacctaatttgattggttgagttaagctcaattgtgatgatgtttgga 3603116  T
Q  380 aggaatttggtactcttgtgagattgaaaaatttaccattgctg 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  3603115 aggaatttggtactcttgtgagattgaaaaatttaccattgctg 3603072  T

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Target: chr8; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 16 - 184
Target Start/End: Complemental strand, 3603568 - 3603401
Alignment:
Q  16 gatgtccgattgaagtgagcaatgaatataacctatgacatgatctatactattgactattgtccattttaccagcaaaacacatatatattgaggtttt 115  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||    
T  3603568 gatgtccgagtgaagtgagcaatgaatataacctatgacatgatctatactattgactattgtccattttaccagcaaaacac----atattgaggtttt 3603473  T
Q  116 c---tatgatgaatttcatgcctccattagtcattggaagtacctacacaataatcaagagtgctgatagga 184  Q
    |   |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  3603472 ctcttatgatgaatttcatgcctccattagtcattggaagtacctacagaataatcaagagtgttgatagga 3603401  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 305 - 397
Target Start/End: Original strand, 41999973 - 42000065
Alignment:
Q  305 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttg 397  Q
    |||| ||||||||||||||||||||||||| ||||  | ||||||| |||||||| |||||||||| || |||||||| || |||||||||||    
T  41999973 aaaaggaaactatatacatcggttggatgcgacctccgtttggttgggttaagcttaattgtgatggtgcttggaagggatctggtactcttg 42000065  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 305 - 393
Target Start/End: Original strand, 45093130 - 45093218
Alignment:
Q  305 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtact 393  Q
    |||| ||||||||||||||||||||||||| ||||  | ||||||| |||||||| |||||||||| || |||||||| || |||||||    
T  45093130 aaaaggaaactatatacatcggttggatgcgacctccgtttggttgggttaagcttaattgtgatggtgcttggaaggcatctggtact 45093218  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 311 - 397
Target Start/End: Original strand, 14769780 - 14769866
Alignment:
Q  311 aaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttg 397  Q
    |||||||||||||||||||||||  |||| | | |||||||||||| || |||||||||| |||||| |||| || | |||||||||    
T  14769780 aaactatatacatcggttggatgagacctctaactggttgagttaaacttaattgtgatggtgtttgaaagggatctagtactcttg 14769866  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 300 - 397
Target Start/End: Original strand, 9215907 - 9216004
Alignment:
Q  300 tcattaaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttg 397  Q
    |||| |||| ||||||||||||| | ||||||||| |||| || ||||||| |||||| | |||||||||  ||||  ||||| || |||||||||||    
T  9215907 tcatcaaaaggaaactatatacaccagttggatgcgacctctggttggttgggttaagattaattgtgatagtgttctgaagggatctggtactcttg 9216004  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 397
Target Start/End: Original strand, 33372929 - 33372979
Alignment:
Q  347 gttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttg 397  Q
    |||| |||||||| |||||||||| ||||||||||| || |||||||||||    
T  33372929 gttgggttaagcttaattgtgatggtgtttggaagggatctggtactcttg 33372979  T

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Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 305 - 397
Target Start/End: Complemental strand, 11996153 - 11996061
Alignment:
Q  305 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttg 397  Q
    |||| ||||||||||||||||||||||||| |||| |||||||||| |||||||| |||||||||| || |||||||| ||||||||||||||    
T  11996153 aaaaggaaactatatacatcggttggatgcgacctctgattggttgggttaagcttaattgtgatggtgcttggaagggatttggtactcttg 11996061  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 305 - 397
Target Start/End: Original strand, 42865606 - 42865698
Alignment:
Q  305 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttg 397  Q
    |||| ||||||||||||||||||||||||| ||||  | ||||||| |||||||| |||||||||| ||  ||||||| || |||||||||||    
T  42865606 aaaaggaaactatatacatcggttggatgcgacctccgtttggttgggttaagcttaattgtgatggtgcctggaagggatctggtactcttg 42865698  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 305 - 393
Target Start/End: Complemental strand, 24126833 - 24126745
Alignment:
Q  305 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtact 393  Q
    |||| ||||||||||||||||||||||||| ||||  |||| |||| |||||||| ||||| |||| || |||||||| || |||||||    
T  24126833 aaaaggaaactatatacatcggttggatgcgacctccgatttgttgggttaagcttaattgcgatggtgcttggaagggatctggtact 24126745  T

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Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 305 - 397
Target Start/End: Complemental strand, 45034096 - 45034004
Alignment:
Q  305 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttg 397  Q
    |||| |||| |||||||||||||||||||| ||||  ||||||||| |||||||| |||||||||| || |||||||| || |||||||||||    
T  45034096 aaaaggaaattatatacatcggttggatgcgacctccgattggttgggttaagcttaattgtgatggtgcttggaagggatatggtactcttg 45034004  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 305 - 397
Target Start/End: Original strand, 46045596 - 46045688
Alignment:
Q  305 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttg 397  Q
    |||| ||||||||||||||||||||||||| ||||  | ||||||| |||||||| |||||||||| || |||||||| || |||||||||||    
T  46045596 aaaaggaaactatatacatcggttggatgcgacctccgtttggttgggttaagcttaattgtgatggtgcttggaagggatctggtactcttg 46045688  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 305 - 398
Target Start/End: Complemental strand, 38111092 - 38110999
Alignment:
Q  305 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttgt 398  Q
    |||| |||| |||||||||||||||||||| ||||  | ||||||| |||||||| |||||||||| || |||||||| || ||||||||||||    
T  38111092 aaaaggaaattatatacatcggttggatgcgacctccgtttggttgggttaagcttaattgtgatggtgcttggaagggatctggtactcttgt 38110999  T

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Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 305 - 397
Target Start/End: Original strand, 8035400 - 8035492
Alignment:
Q  305 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttg 397  Q
    |||| ||||||||||||||||||||||||| ||||   |||| ||| |||||||| |||||||||| || |||||||| || |||||||||||    
T  8035400 aaaaggaaactatatacatcggttggatgcgacctccaattgcttgggttaagcttaattgtgatggtgcttggaagggatctggtactcttg 8035492  T

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Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 305 - 397
Target Start/End: Original strand, 14024624 - 14024716
Alignment:
Q  305 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttg 397  Q
    |||| ||||||||||||||||||||||||| ||||  | ||||||| |||||||| |||||||||| || |||||||| || |||||||||||    
T  14024624 aaaaggaaactatatacatcggttggatgcgacctccgtttggttgggttaagcttaattgtgatggtgcttggaagggatctggtactcttg 14024716  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 305 - 397
Target Start/End: Original strand, 32386177 - 32386269
Alignment:
Q  305 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttg 397  Q
    |||| ||||||||||||||||||||||||| ||||  ||||||||| |||||||| |||||||||| || ||||| || || |||||||||||    
T  32386177 aaaaggaaactatatacatcggttggatgcgacctccgattggttgggttaagcttaattgtgatggtgcttggatgggatctggtactcttg 32386269  T

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Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 305 - 397
Target Start/End: Original strand, 1369123 - 1369215
Alignment:
Q  305 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttg 397  Q
    |||| ||||||||||||||||||||||||| ||||  | ||||||| |||||||| |||||||||| || |||||||| || |||||||||||    
T  1369123 aaaaggaaactatatacatcggttggatgcgacctccgtttggttgggttaagcttaattgtgatggtgcttggaagggatctggtactcttg 1369215  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 305 - 397
Target Start/End: Complemental strand, 28945786 - 28945694
Alignment:
Q  305 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttg 397  Q
    |||| ||||||||||||||||||||||||| ||||  | ||||||| |||||||| |||||||||| || |||||||| || |||||||||||    
T  28945786 aaaaggaaactatatacatcggttggatgcgacctccgtttggttgggttaagcttaattgtgatggtgcttggaagggatctggtactcttg 28945694  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 397
Target Start/End: Complemental strand, 36859226 - 36859134
Alignment:
Q  305 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttg 397  Q
    |||| |||| |||||||||||||||| ||| ||||  ||||||||  ||||||||  ||||||||| || ||| |||| || |||||||||||    
T  36859226 aaaaggaaaatatatacatcggttgggtgcgacctcagattggttaggttaagcttgattgtgatggtgcttgaaagggatctggtactcttg 36859134  T

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Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 305 - 397
Target Start/End: Original strand, 6293705 - 6293797
Alignment:
Q  305 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactcttg 397  Q
    |||| ||||||||||||||||||||||||| ||||  | ||||||| |||||||| |||||||||| || |||||||| || |||||||||||    
T  6293705 aaaaggaaactatatacatcggttggatgcgacctccgtttggttgggttaagcttaattgtgatggtgcttggaagggatctggtactcttg 6293797  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 396
Target Start/End: Original strand, 28705680 - 28705771
Alignment:
Q  305 aaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgatgatgtttggaaggaatttggtactctt 396  Q
    |||| ||||||||||||||||||||| ||  ||||  ||||||||| |||||||| |||| ||||| || |||||||| || ||||||||||    
T  28705680 aaaaggaaactatatacatcggttgggtgtgacctcagattggttgggttaagcttaattttgatggtgcttggaagggatctggtactctt 28705771  T

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Target: chr3 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 298 - 369
Target Start/End: Original strand, 1182170 - 1182241
Alignment:
Q  298 cctcattaaaatgaaactatatacatcggttggatgccacctttgattggttgagttaagctcaattgtgat 369  Q
    |||||| |||| |||||||||||||||||||| |||| |||| |||||||||| |||||||| |||||||||    
T  1182170 cctcatcaaaaggaaactatatacatcggttgaatgcgacctctgattggttgtgttaagcttaattgtgat 1182241  T

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