View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18196_low_21 (Length: 419)
Name: NF18196_low_21
Description: NF18196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18196_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 15 - 402
Target Start/End: Original strand, 1245710 - 1246095
Alignment:
| Q |
15 |
atcgtcttcatcacgtttatctcctcggctttacaagattcaaaagcagcattcacttccacaaaacatggaggcgaggaagttggataaagggaagaaa |
114 |
Q |
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| T |
1245710 |
atcgtcttcatcacgtttatctcctcggctttacaagattcaaaagcagcattcacttccacaaaacatggaggcgaggaagttggataaagggaagaaa |
1245809 |
T |
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| Q |
115 |
attctaatgcctagtattagtagcctttttcctaggnnnnnnngcttgcaggttgagagaggacttccttcttaccttccaggtgagactcctttgtgaa |
214 |
Q |
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| T |
1245810 |
attctaatgcctagtattagtagcctttttcctaggaaaaaaagcttgcaggttgagagaggacttccttcttaccttccaggtgagactcctttgtgaa |
1245909 |
T |
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| Q |
215 |
aaatttgttctaattttgtgagagtagcatgttgatttatgtgagagtagagttctatgctatcagatttttgtcttcatcatagagtatgagggaaatg |
314 |
Q |
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| T |
1245910 |
a--tttgttctaattttgtgagagtagcatgttgatttatgtgagagtagagttctatgctatcagatttttgtcttcatcatagagtatgagggaaatg |
1246007 |
T |
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| Q |
315 |
aattttgaaatatcagtagtttggtaacaaattcaggttgaatgttgcagtagattattgttgctgaatttggaggtttcatgttttg |
402 |
Q |
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| T |
1246008 |
aattttgaaatatcagtagtttggtaacaaattcaggttgaatgttgcagtagattattgttgctgaattttgaggtttcatgttttg |
1246095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 8 - 401
Target Start/End: Original strand, 42010365 - 42010756
Alignment:
| Q |
8 |
catcatcatcgtcttcatcacgtttatctcctcggctttacaagattcaaaagcagcattcacttccacaaaacatggaggcgaggaagttggataaagg |
107 |
Q |
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| T |
42010365 |
catcatcatcgtcttcatcacgtttatctcctcggctttacaagattcaaaagcagcattcacttccacaaaacatggaggcgaggaagttggaaaaagg |
42010464 |
T |
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| Q |
108 |
gaagaaaattctaatgcctagtattagtagcctttttcctaggnnnnnnngcttgcaggttgagagaggacttccttcttaccttccaggtgagactcct |
207 |
Q |
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| T |
42010465 |
gaagaaaattctattgcctagtattagtagcttttttcctaggaaaaaaagcttgcaggttgagagaggacttccttcttaccttccaggtgagactcct |
42010564 |
T |
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| Q |
208 |
ttgtgaaaaatttgttctaattttgtgagagtagcatgttgatttatgtgagagtagagttctatgctatcagatttttgtcttcatcatagagtatgag |
307 |
Q |
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| T |
42010565 |
ttgtgaaa--tttgttctaattttgtgagagtagcatgttgatttatgtgagagtagagttttatgctatcagatttttgtcttcatcatagagtatgag |
42010662 |
T |
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| Q |
308 |
ggaaatgaattttgaaatatcagtagtttggtaacaaattcaggttgaatgttgcagtagattattgttgctgaatttggaggtttcatgtttt |
401 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42010663 |
ggaaatgatttttgaaatatcagtagtttggtaacaaattcagattgaatgttgcagtagattattgttgctgaattttgaggtttcatgtttt |
42010756 |
T |
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