View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18196_low_23 (Length: 390)

Name: NF18196_low_23
Description: NF18196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18196_low_23
NF18196_low_23
[»] chr2 (7 HSPs)
chr2 (10-390)||(2293906-2294286)
chr2 (10-390)||(2310237-2310617)
chr2 (10-390)||(2303519-2303899)
chr2 (10-386)||(2321224-2321601)
chr2 (40-390)||(2327074-2327424)
chr2 (10-390)||(2351095-2351475)
chr2 (16-390)||(2330789-2331163)
[»] chr8 (3 HSPs)
chr8 (56-386)||(41127105-41127435)
chr8 (67-183)||(26494893-26495009)
chr8 (245-354)||(26506746-26506855)
[»] chr4 (1 HSPs)
chr4 (137-200)||(55017070-55017133)
[»] chr5 (1 HSPs)
chr5 (68-186)||(15176287-15176405)


Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 10 - 390
Target Start/End: Complemental strand, 2294286 - 2293906
Alignment:
Q  10 catcatcatagtgaattcttgtatttccgtcaaatcaacatgcccgccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattcc 109  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  2294286 catcaccatggtgaattcttgtatttccgtcaaatcaacatgcccgccctctggaaccttccaatcgaaattccaaaccaagttagccacaaaatattcc 2294187  T
Q  110 aaatggagcaaagctaaattaagtccgggacaaattcttcttccagctccaaacggcatcatctttatctctttacttcctgtaatgtcaaaagtctcat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2294186 aaatggagcaaagctaaattaagtccgggacaaattcttcttccagctccaaacggcatcatctttatctctttacttcctgtaatgtcaaaagtctcat 2294087  T
Q  210 ccttcaaaaacctttctggcttaaactccaatgggtcctcccaaacacgaggatccaacgccatctccgccagcaagaaattcaccgtcccgtttttagg 309  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2294086 ccttcaaaaacctttctggcttaaactccaacgggtcctcccaaacacgaggatccaacgccatctccgccagcaagaaattcaccgtcccgtttttagg 2293987  T
Q  310 caccaaataaccgtccaaaaccacatcctctttcaccgcatgtggcaacggaaatttccccggtggatgacgcctcaaccc 390  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2293986 caccaaataaccgtccaaaaccacatcctctttcaccgcgtgtggcaacggaaatttccccggtggatgacgcctcaaccc 2293906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 10 - 390
Target Start/End: Complemental strand, 2310617 - 2310237
Alignment:
Q  10 catcatcatagtgaattcttgtatttccgtcaaatcaacatgcccgccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattcc 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2310617 catcaccatagtgaattcttgtatttccgtcaaatcaacatgcccgccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattcc 2310518  T
Q  110 aaatggagcaaagctaaattaagtccgggacaaattcttcttccagctccaaacggcatcatctttatctctttacttcctgtaatgtcaaaagtctcat 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  2310517 aaatggagcaaagctaaattaagtccgggacaaattcttcttccagctccaaacggcatcatctttatctctttacttcctggaatgacaaaagtctcat 2310418  T
Q  210 ccttcaaaaacctttctggcttaaactccaatgggtcctcccaaacacgaggatccaacgccatctccgccagcaagaaattcaccgtcccgtttttagg 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2310417 ccttcaaaaacctttctggcttaaactccaatgggtcctcccaaacacgacgatccaacgccatctccgccagaaagaaattcaccgtcccgtttttagg 2310318  T
Q  310 caccaaataaccgtccaaaaccacatcctctttcaccgcatgtggcaacggaaatttccccggtggatgacgcctcaaccc 390  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  2310317 caccaaataaccgtccaaaaccacatcctctttcaccgcgtgtggcaacggaaatttccccgatggatgacgcctcaaccc 2310237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 10 - 390
Target Start/End: Complemental strand, 2303899 - 2303519
Alignment:
Q  10 catcatcatagtgaattcttgtatttccgtcaaatcaacatgcccgccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattcc 109  Q
    ||||| |||| ||||||||||| |||||| |||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  2303899 catcaccatattgaattcttgtttttccgacaaatcaacatagccgccctctggaagcttccaatcgaaattccaaaccaaattagccacaaaatattct 2303800  T
Q  110 aaatggagcaaagctaaattaagtccgggacaaattcttcttccagctccaaacggcatcatctttatctctttacttcctgtaatgtcaaaagtctcat 209  Q
    |||||||||||||||||||||||| | ||||||||||| ||| ||||| |||||||||||||||||||||| ||||| ||||||||||||||| ||||||    
T  2303799 aaatggagcaaagctaaattaagtgcaggacaaattctcctttcagcttcaaacggcatcatctttatctccttactccctgtaatgtcaaaattctcat 2303700  T
Q  210 ccttcaaaaacctttctggcttaaactccaatgggtcctcccaaacacgaggatccaacgccatctccgccagcaagaaattcaccgtcccgtttttagg 309  Q
    ||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||| || ||||||||||||||| ||||||||||||||| ||||||||    
T  2303699 ccttccaaaacctttctggcttaaactccattggatcctcccaaacacgaggatcccaccccatctccgccagcatgaaattcaccgtcccatttttagg 2303600  T
Q  310 caccaaataaccgtccaaaaccacatcctctttcaccgcatgtggcaacggaaatttccccggtggatgacgcctcaaccc 390  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||| |||| | ||||||||||||||||||||||||    
T  2303599 caccaaataaccgttcaaaaccacatcctctttcaccgcgtgtggcaacagaaaatgccccggtggatgacgcctcaaccc 2303519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 10 - 386
Target Start/End: Complemental strand, 2321601 - 2321224
Alignment:
Q  10 catcatcatagtgaattcttgtatttccgtcaaatcaacatgcccgccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattcc 109  Q
    ||||| |||||||||||| | | |||||| |||||||||||| || ||||| |||| || ||||| ||||||||||||||| ||||||||||||||||||    
T  2321601 catcaccatagtgaattcatctttttccgacaaatcaacatggccaccctccggaagctgccaattgaaattccaaaccaagttagccacaaaatattcc 2321502  T
Q  110 aaatggagcaaagctaaattaagtccgggacaaattcttcttccagctccaaacggcatcatctttatctctttacttcctgtaatgtcaaaagtctcat 209  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||    
T  2321501 aaatggagcaaagctaaattaagtccgggacaaattctccttccagctccaaacggcatcatctttatctctttactccctataatatcaaaagtctcat 2321402  T
Q  210 ccttcaaaaacctttctggcttaaactccaatgggtcctcccaaacacgaggatccaacgccatctccgccagcaagaaattcaccgtcccgtttttagg 309  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||| ||||||||    
T  2321401 ccttcaaaaacctttctggcttaaactccattggatcctcccaaacacgaggatcccacgccatctccgacagcatgaaattcaccgtcccatttttagg 2321302  T
Q  310 caccaaataaccgtccaaaaccacatcctctttcaccgcatgtggcaacggaaatttcccc-ggtggatgacgcctca 386  Q
    |||||||||||||| |||||||||||||||||||||||  |||| ||||  ||| | |||| ||||||||||||||||    
T  2321301 caccaaataaccgttcaaaaccacatcctctttcaccgtgtgtgccaacacaaaatgcccctggtggatgacgcctca 2321224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 40 - 390
Target Start/End: Complemental strand, 2327424 - 2327074
Alignment:
Q  40 caaatcaacatgcccgccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagcaaagctaaattaagtccggga 139  Q
    |||||| ||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||| |||    
T  2327424 caaatcgacatggccaccctccggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccgga 2327325  T
Q  140 caaattcttcttccagctccaaacggcatcatctttatctctttacttcctgtaatgtcaaaagtctcatccttcaaaaacctttctggcttaaactcca 239  Q
    |||||||| || ||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2327324 caaattctcctaccagctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaacctttctggcttaaactcca 2327225  T
Q  240 atgggtcctcccaaacacgaggatccaacgccatctccgccagcaagaaattcaccgtcccgtttttaggcaccaaataaccgtccaaaaccacatcctc 339  Q
     ||| |||||||||||||||||||||||| ||||||| |||| || ||||||||||||||| |||||||||||||||||||| | |||||||||||| ||    
T  2327224 ttggatcctcccaaacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttaggcaccaaataaccattcaaaaccacatcatc 2327125  T
Q  340 tttcaccgcatgtggcaacggaaatttccccggtggatgacgcctcaaccc 390  Q
      |||| ||||| ||||||  ||| | ||| ||||||||||||||||||||    
T  2327124 gctcactgcatgaggcaacacaaaatgccctggtggatgacgcctcaaccc 2327074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 10 - 390
Target Start/End: Complemental strand, 2351475 - 2351095
Alignment:
Q  10 catcatcatagtgaattcttgtatttccgtcaaatcaacatgcccgccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattcc 109  Q
    ||||| || ||||||||||||| |||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2351475 catcaccacagtgaattcttgtttttccgacaaatcaacatgcccaccttctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattcc 2351376  T
Q  110 aaatggagcaaagctaaattaagtccgggacaaattcttcttccagctccaaacggcatcatctttatctctttacttcctgtaatgtcaaaagtctcat 209  Q
    || || |||||||||||||||  ||||||||| ||||| || ||| | ||||| ||||||||||||||||||||||| || ||||||||||| || ||||    
T  2351375 aagtgaagcaaagctaaattatatccgggacagattctcctaccaacaccaaatggcatcatctttatctctttactccccgtaatgtcaaatgtttcat 2351276  T
Q  210 ccttcaaaaacctttctggcttaaactccaatgggtcctcccaaacacgaggatccaacgccatctccgccagcaagaaattcaccgtcccgtttttagg 309  Q
    ||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||| || ||||||| |||| ||  ||||| |||||||| ||||||||    
T  2351275 ccttcaaaaacctctctggcttaaactccattggatcctcccaaacacgaggatcccaccccatctctgccaccataaaattgaccgtcccatttttagg 2351176  T
Q  310 caccaaataaccgtccaaaaccacatcctctttcaccgcatgtggcaacggaaatttccccggtggatgacgcctcaaccc 390  Q
    ||||||||||||||  |||| |||||||||| ||||||| |||||||||  |   | ||||||||||||||||||||||||    
T  2351175 caccaaataaccgttaaaaagcacatcctctgtcaccgcgtgtggcaacacattatgccccggtggatgacgcctcaaccc 2351095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 390
Target Start/End: Complemental strand, 2331163 - 2330789
Alignment:
Q  16 catagtgaattcttgtatttccgtcaaatcaacatgcccgccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatgg 115  Q
    |||||||||||| ||| | || | |||||||||  | || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2331163 catagtgaattcctgtttctctgacaaatcaacgcgaccaccctcgggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatga 2331064  T
Q  116 agcaaagctaaattaagtccgggacaaattcttcttccagctccaaacggcatcatctttatctctttacttcctgtaatgtcaaaagtctcatccttca 215  Q
    |||||||||||||||  ||| ||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2331063 agcaaagctaaattatatccaggacaaattctcctcccagctccaaatggcatcatctttatctctttacttcctgtaatgtcaaaagtctcatccttca 2330964  T
Q  216 aaaacctttctggcttaaactccaatgggtcctcccaaacacgaggatccaacgccatctccgccagcaagaaattcaccgtcccgtttttaggcaccaa 315  Q
    ||||||||||||||||||| |||| ||| ||||||||||||||||| |||||| ||||||| || | ||  |||||||||||||| | ||||||||||||    
T  2330963 aaaacctttctggcttaaattccattggatcctcccaaacacgagggtccaaccccatctctgcaaccataaaattcaccgtcccatctttaggcaccaa 2330864  T
Q  316 ataaccgtccaaaaccacatcctctttcaccgcatgtggcaacggaaatttccccggtggatgacgcctcaaccc 390  Q
    |||||| | |||||||||||||||  |||| || || ||||||   || | ||| ||||||||||||||||||||    
T  2330863 ataaccattcaaaaccacatcctcgctcactgcgtgaggcaacacgaaatgccctggtggatgacgcctcaaccc 2330789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 56 - 386
Target Start/End: Complemental strand, 41127435 - 41127105
Alignment:
Q  56 ccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattcttcttccag 155  Q
    |||||| ||| ||||||||  |||||||| ||||||||||||||||| |||||||||||||||||||||||||||  ||| ||||||||||| || |||     
T  41127435 ccctctagaatcttccaattaaaattccagaccaaattagccacaaagtattccaaatggagcaaagctaaattatatccaggacaaattctcctcccaa 41127336  T
Q  156 ctccaaacggcatcatctttatctctttacttcctgtaatgtcaaaagtctcatccttcaaaaacctttctggcttaaactccaatgggtcctcccaaac 255  Q
    ||||||||||||||||||||||||||||| | || ||||| ||||||| |||||||||||||||||||||||| |||||||||||||| || ||||||||    
T  41127335 ctccaaacggcatcatctttatctctttagtcccggtaatatcaaaagcctcatccttcaaaaacctttctggtttaaactccaatggatcttcccaaac 41127236  T
Q  256 acgaggatccaacgccatctccgccagcaagaaattcaccgtcccgtttttaggcaccaaataaccgtccaaaaccacatcctctttcaccgcatgtggc 355  Q
    || ||| |||  | | || || |||| || |||||||||   | | |||||||||| ||| |||||||| |||||||||||||| ||||||||||| |||    
T  41127235 actagggtccctccctatgtctgccaccatgaaattcactaccacatttttaggcagcaagtaaccgtcgaaaaccacatcctccttcaccgcatggggc 41127136  T
Q  356 aacggaaatttccccggtggatgacgcctca 386  Q
    |||  ||| | ||||||||| |||| |||||    
T  41127135 aacacaaagtgccccggtgggtgacacctca 41127105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 67 - 183
Target Start/End: Complemental strand, 26495009 - 26494893
Alignment:
Q  67 cttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattcttcttccagctccaaacggc 166  Q
    |||||| || || ||| ||||||||||||| ||||| ||||| ||||||||||  || || |||    | |||||||| || || || ||||||||||||    
T  26495009 cttccactcaaagttcaaaaccaaattagcaacaaagtattctaaatggagcattgccaatttataggcaggacaaatcctcctccctgctccaaacggc 26494910  T
Q  167 atcatctttatctcttt 183  Q
    |||||||||||||||||    
T  26494909 atcatctttatctcttt 26494893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 354
Target Start/End: Complemental strand, 26506855 - 26506746
Alignment:
Q  245 tcctcccaaacacgaggatccaacgccatctccgccagcaagaaattcaccgtcccgtttttaggcaccaaataaccgtccaaaaccacatcctctttca 344  Q
    |||||||||||||  |||||| || | | ||| |||| ||  ||||| || ||||| |||||||||||||| |||||||  |||| |||||||||  |||    
T  26506855 tcctcccaaacacttggatcccacccaacctctgccaccataaaattaactgtcccatttttaggcaccaagtaaccgttaaaaatcacatcctcggtca 26506756  T
Q  345 ccgcatgtgg 354  Q
    | ||||||||    
T  26506755 ctgcatgtgg 26506746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 137 - 200
Target Start/End: Complemental strand, 55017133 - 55017070
Alignment:
Q  137 ggacaaattcttcttccagctccaaacggcatcatctttatctctttacttcctgtaatgtcaa 200  Q
    |||||||| || || ||||| ||||||||||||||||| ||||||||| |||||||||| ||||    
T  55017133 ggacaaatcctcctcccagcaccaaacggcatcatcttcatctctttagttcctgtaatatcaa 55017070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 186
Target Start/End: Original strand, 15176287 - 15176405
Alignment:
Q  68 ttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagcaaagctaaattaagtccgggacaaattcttcttccagctccaaacggca 167  Q
    ||||| || |||||| |||| ||||| || ||||| |||||||| || | ||| ||||||  |   || ||||| ||||| || || |||||||| ||||    
T  15176287 ttccactcaaaattcaaaacaaaattggcaacaaagtattccaagtgcaacaatgctaaaccatagccaggacacattctcctccctgctccaaatggca 15176386  T
Q  168 tcatctttatctctttact 186  Q
    |||||||||||||||||||    
T  15176387 tcatctttatctctttact 15176405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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