View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18196_low_26 (Length: 385)
Name: NF18196_low_26
Description: NF18196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18196_low_26 |
 | |
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| [»] chr8 (10 HSPs) |
| |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 367; Significance: 0; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 11 - 385
Target Start/End: Complemental strand, 1963219 - 1962845
Alignment:
| Q |
11 |
catcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggaccctt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
1963219 |
catcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcatctgtcattgcttctataggaccctt |
1963120 |
T |
|
| Q |
111 |
ttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatcttga |
210 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1963119 |
ttcaatttccaggaagctattaataagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatcttga |
1963020 |
T |
|
| Q |
211 |
gctaggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatccaact |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1963019 |
gctaggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatccaact |
1962920 |
T |
|
| Q |
311 |
tgagcaaatggaagtatgaagacaaagaggtgacagaagcagggtagtaaacataggacaacaagttgaattcct |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1962919 |
tgagcaaatggaagtatgaagacaaagaggtgacagaagcagggtagtaaacataggacaacaagttgaattcct |
1962845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 11 - 385
Target Start/End: Original strand, 2015210 - 2015584
Alignment:
| Q |
11 |
catcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggaccctt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |
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|
| T |
2015210 |
catcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcagtgcttctataggaccgtt |
2015309 |
T |
|
| Q |
111 |
ttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatcttga |
210 |
Q |
| |
|
||| ||||| | ||| |||||||| |||| ||||||||||||||| ||||||||||||| |||||| ||| | |||||||||||||| |||||||||||| |
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|
| T |
2015310 |
ttcgatttctatgaaactattaataagaataccatcaaaaagacgcaatttttcaacaccttggagtaagtatttgtaagattgactggatctatcttga |
2015409 |
T |
|
| Q |
211 |
gctaggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatccaact |
310 |
Q |
| |
|
||||| |||| || |||||||||||||||||| |||| ||||||||||||||||||| | ||||||||||||||||| ||||| ||||||||||| |||| |
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|
| T |
2015410 |
gctagctcaaaaagatcccgaccatgaatcggaacactacctggtatttgaataggcccaggaagatctctgtactcgcatgatgtttccttatctaact |
2015509 |
T |
|
| Q |
311 |
tgagcaaatggaagtatgaagacaaagaggtgacagaagcagggtagtaaacataggacaacaagttgaattcct |
385 |
Q |
| |
|
||||||||| |||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2015510 |
tgagcaaatagaagtatgaagacaaactggtggctgaagcagggtagtaaacataggacaacaagttgaattcct |
2015584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 11 - 380
Target Start/End: Original strand, 2018593 - 2018962
Alignment:
| Q |
11 |
catcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggaccctt |
110 |
Q |
| |
|
|||||||||| ||| | ||| | ||||||||||| |||||||||||||| ||| | |||| |||||| || ||||| | ||||||||||||||| || |
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|
| T |
2018593 |
catcatcacccgatttggttggcgtttggataattggtccaacagcataaacatcagggttgccacttctgtcttctgtgagtgcttctataggaccttt |
2018692 |
T |
|
| Q |
111 |
ttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatcttga |
210 |
Q |
| |
|
||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||| || || ||||| ||||||||||||||||||||||||||| |
|
|
| T |
2018693 |
ttcaatttctaggaagctattaataagaataccatcaaaaagacggaatttttcaacacgttcaagtaagaatttgtaagattgacttgatctatcttga |
2018792 |
T |
|
| Q |
211 |
gctaggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatccaact |
310 |
Q |
| |
|
||| |||||| || |||| |||||||||| || ||||| ||||||||||||||||||||| |||||||| |||||| |||||| |||||||||| ||||| |
|
|
| T |
2018793 |
gcttggtcaacaagatcctgaccatgaattggtacacagcctggtatttgaataggctctagaagatctttgtactgacatgatgtttccttattcaact |
2018892 |
T |
|
| Q |
311 |
tgagcaaatggaagtatgaagacaaagaggtgacagaagcagggtagtaaacataggacaacaagttgaa |
380 |
Q |
| |
|
||||||||| |||||||||||||||| |||||| |||| ||| |||||||||||||||||| |||||| |
|
|
| T |
2018893 |
tgagcaaatagaagtatgaagacaaactggtgactgaagaaggaaagtaaacataggacaacatgttgaa |
2018962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 26 - 168
Target Start/End: Complemental strand, 2433093 - 2432951
Alignment:
| Q |
26 |
ttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggacccttttcaatttccaggaa |
125 |
Q |
| |
|
|||||| ||| ||||| ||||||||||||| |||||||||| | |||||||||||||| ||||||| ||||| |||||||||| |||| ||||| | ||| |
|
|
| T |
2433093 |
ttgttattgtctggatgatgggtccaacaggatacacaagaggattttcacttccttcatctgtcagtgcttttataggacccctttccatttctaagaa |
2432994 |
T |
|
| Q |
126 |
gctattaattagaacaccatcaaaaagacggaatttttcaaca |
168 |
Q |
| |
|
|||||||| ||||||||||||| || |||| |||||| |||| |
|
|
| T |
2432993 |
gctattaacaagaacaccatcaacaaaacggtattttttaaca |
2432951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 11 - 324
Target Start/End: Original strand, 2008196 - 2008509
Alignment:
| Q |
11 |
catcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggaccctt |
110 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||||| |||||||||| |||||| || |||| |||| ||| || ||| ||||||| || ||||||| | |
|
|
| T |
2008196 |
catcatcaccagattttgtttctgtttcgataataggtccaacaggatacactggagggttgtcacctccctcctctttcattgcacttagaggacccat |
2008295 |
T |
|
| Q |
111 |
ttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatcttga |
210 |
Q |
| |
|
|| ||||| ||||||||||||| |||||||||||| | || || || |||| || |||| ||| ||||||| ||||||||||||||||||| |
|
|
| T |
2008296 |
ctctatttctaggaagctattaacaagaacaccatcagcagaacttaaaagtttaacaaatgggaggaagtgtttgtaagcttgacttgatctatcttga |
2008395 |
T |
|
| Q |
211 |
gctagg-tcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatccaac |
309 |
Q |
| |
|
|||| | |||||||| |||| ||||| | || |||||||||||||||| ||||||||| | | |||||| ||||||||||| ||||||| ||||| | |
|
|
| T |
2008396 |
gctatgctcaagaaa-tccctgccatggagtggtacacaacctggtatttttataggctctagtatatctctatactcacatgatgtttcctcatccagc |
2008494 |
T |
|
| Q |
310 |
ttgagcaaatggaag |
324 |
Q |
| |
|
|| |||||| |||| |
|
|
| T |
2008495 |
ttaggcaaatagaag |
2008509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 27 - 324
Target Start/End: Original strand, 2011827 - 2012124
Alignment:
| Q |
27 |
tgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggacccttttcaatttccaggaag |
126 |
Q |
| |
|
||||| ||| ||||| ||||||||||||| ||| ||| | |||| |||||||||| ||||||| ||| | |||||| ||| |||| ||||| | |||| |
|
|
| T |
2011827 |
tgttactgtctggatgatgggtccaacaggatagacagaagggttgccacttccttcctctgtcaatgcatttataggtcccatttccatttctaagaag |
2011926 |
T |
|
| Q |
127 |
ctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatcttgagcta-ggtcaagaaaa |
225 |
Q |
| |
|
||||||| |||||||||||| || || || ||| |||| ||| || ||| | ||||||| ||||||||||||||||||| ||| ||||||| | | |
|
|
| T |
2011927 |
ctattaacaagaacaccatcagcaaaacttaaacttttaacatgttgaaggaagtatttgtaagcttgacttgatctatcttgaactatggtcaag-aga |
2012025 |
T |
|
| Q |
226 |
tcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatccaacttgagcaaatggaag |
324 |
Q |
| |
|
|||| ||||| | || || || || |||| || ||||||||||| ||||||||||||||||||| ||||||| ||||||||| |||||| |||| |
|
|
| T |
2012026 |
tccctgccatggagtggtacgcagcccggtactttgataggctctgggagatctctgtactcacatgttgtttcctcatccaacttaggcaaatagaag |
2012124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 38 - 147
Target Start/End: Original strand, 2004843 - 2004952
Alignment:
| Q |
38 |
ggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggacccttttcaatttccaggaagctattaattag |
137 |
Q |
| |
|
|||| ||||||||||||| ||||||| || |||||||||||||||| ||| ||||||| |||||||||| | || ||||| ||||||||||||| || |
|
|
| T |
2004843 |
ggatgatgggtccaacaggatacacaggagggttttcacttccttcatctttcattgcacttataggacccatctccatttctaggaagctattaacaag |
2004942 |
T |
|
| Q |
138 |
aacaccatca |
147 |
Q |
| |
|
|||||||||| |
|
|
| T |
2004943 |
aacaccatca |
2004952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 11 - 307
Target Start/End: Complemental strand, 1968819 - 1968523
Alignment:
| Q |
11 |
catcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggaccctt |
110 |
Q |
| |
|
|||||||||| || ||||| |||||||||||| |||||||||| |||||| || |||| |||||||| || ||| ||||||| |||||| ||| | |
|
|
| T |
1968819 |
catcatcacctgaacttgtttctgtttggataattggtccaacaggatacactggagggttgtcacttccctcctctttcattgcacttataggtcccat |
1968720 |
T |
|
| Q |
111 |
ttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatcttga |
210 |
Q |
| |
|
|| | ||||||||||||||||| | |||||||||| || || || || || | | |||| ||| |||||| ||||||||||||||||||| |
|
|
| T |
1968719 |
ctccaattccaggaagctattaacaaaaacaccatcagcaaaacttaaaagtttaaaaagtgggaggaagtgtttgtaaacttgacttgatctatcttga |
1968620 |
T |
|
| Q |
211 |
gctagg-tcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatcca |
307 |
Q |
| |
|
|||| | |||||| | |||| ||||| || || ||||| |||||||||| ||||||||||| | |||||| ||||||||||| ||||||| ||||| |
|
|
| T |
1968619 |
gctacgctcaagaga-tccctgccatggattggtacacagcctggtatttttataggctctggtatatctctatactcacatgatgtttcctcatcca |
1968523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 43 - 147
Target Start/End: Complemental strand, 1964851 - 1964747
Alignment:
| Q |
43 |
atgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggacccttttcaatttccaggaagctattaattagaacac |
142 |
Q |
| |
|
||||||||||||| ||||||| | |||| |||||||||| |||||| ||||| |||||| ||| |||| ||||| | ||||||||||| ||||||| |
|
|
| T |
1964851 |
atgggtccaacaggatacacagaagggttgccacttccttcctctgtcggtgcttttataggtcccatttccatttctaagaagctattaacaagaacac |
1964752 |
T |
|
| Q |
143 |
catca |
147 |
Q |
| |
|
||||| |
|
|
| T |
1964751 |
catca |
1964747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 324
Target Start/End: Original strand, 2004989 - 2005129
Alignment:
| Q |
184 |
ttgtaagattgacttgatctatcttgagctagg-tcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctg |
282 |
Q |
| |
|
||||||| ||||||||| |||||||||| | || ||| || | |||| ||||| || || |||||||||||||||| |||||| |||| | ||||| |
|
|
| T |
2004989 |
ttgtaagcttgacttgacctatcttgagttgggctcatgaga-tccctgccatggattggtacacaacctggtatttttataggcactggtatatctcca |
2005087 |
T |
|
| Q |
283 |
tactcacatgaagtttccttatccaacttgagcaaatggaag |
324 |
Q |
| |
|
||||||||||| ||||| | ||||||||| |||||| |||| |
|
|
| T |
2005088 |
tactcacatgatgtttcttcatccaacttaggcaaatagaag |
2005129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 33 - 385
Target Start/End: Complemental strand, 5902376 - 5902024
Alignment:
| Q |
33 |
tgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggacccttttcaatttccaggaagctatta |
132 |
Q |
| |
|
|||||||||||||||||||| || |||||| | |||| |||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5902376 |
tgtttggataatgggtccaatagggtacacagcagggttaccacttccttcttctgtcagtgcttctataggacctttttcaatttccaggaagctatta |
5902277 |
T |
|
| Q |
133 |
attagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatcttgagctaggtcaagaaaatcccgac |
232 |
Q |
| |
|
|| || | ||||||| | || |||| ||| || || |||||| ||||| ||||||||||| || ||||||||||||||| || ||| | |||||||| |
|
|
| T |
5902276 |
ataagtatgccatcaacagaacagaatcttttaatacgttggagtaagaatttgtaagattggctcgatctatcttgagcttgggcaacgagatcccgac |
5902177 |
T |
|
| Q |
233 |
catgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatccaacttgagcaaatggaagtatgaaga |
332 |
Q |
| |
|
|| |||| || |||||||||||| ||||||||| ||||| |||||||||||||||||||| |||||||||||||| |||||||||| |||||| |||| |
|
|
| T |
5902176 |
cacgaattggtacacaacctggtgcttgaataggttctggcagatctctgtactcacatgatgtttccttatccaatttgagcaaatagaagtagaaaga |
5902077 |
T |
|
| Q |
333 |
caaagaggtgacagaagcagggtagtaaacataggacaacaagttgaattcct |
385 |
Q |
| |
|
||||| |||| | | || |||| |||||||||||||||||| |||||| |||| |
|
|
| T |
5902076 |
caaagtggtggctgcaggagggaagtaaacataggacaacatgttgaactcct |
5902024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 324
Target Start/End: Complemental strand, 18189931 - 18189870
Alignment:
| Q |
263 |
taggctctggaagatctctgtactcacatgaagtttccttatccaacttgagcaaatggaag |
324 |
Q |
| |
|
|||||||||| |||| |||||||||||||| ||||||| ||||||||| |||||| |||| |
|
|
| T |
18189931 |
taggctctggtagatttctgtactcacatgttgtttcctcatccaacttaggcaaatagaag |
18189870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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