View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18196_low_27 (Length: 379)

Name: NF18196_low_27
Description: NF18196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18196_low_27
NF18196_low_27
[»] chr8 (4 HSPs)
chr8 (9-363)||(15247682-15248050)
chr8 (265-347)||(10758178-10758260)
chr8 (257-347)||(32840907-32840997)
chr8 (254-326)||(1058019-1058091)
[»] chr1 (4 HSPs)
chr1 (9-119)||(28024328-28024438)
chr1 (257-341)||(489249-489333)
chr1 (258-340)||(39976138-39976220)
chr1 (300-340)||(6557074-6557114)
[»] chr5 (2 HSPs)
chr5 (15-114)||(503699-503798)
chr5 (259-341)||(11064727-11064809)
[»] chr6 (2 HSPs)
chr6 (46-107)||(23764695-23764756)
chr6 (266-335)||(33630430-33630499)
[»] chr3 (5 HSPs)
chr3 (9-101)||(48949162-48949254)
chr3 (260-347)||(42747703-42747791)
chr3 (300-341)||(25447172-25447213)
chr3 (262-290)||(30668947-30668975)
chr3 (266-326)||(39980797-39980857)
[»] chr7 (6 HSPs)
chr7 (49-119)||(32274457-32274527)
chr7 (86-119)||(32005741-32005774)
chr7 (257-337)||(33678839-33678919)
chr7 (265-352)||(19302479-19302566)
chr7 (265-326)||(19022527-19022588)
chr7 (258-315)||(44989630-44989687)
[»] chr4 (4 HSPs)
chr4 (265-347)||(27329997-27330079)
chr4 (257-327)||(1706681-1706751)
chr4 (300-341)||(15173230-15173271)
chr4 (300-341)||(41336862-41336903)
[»] chr2 (5 HSPs)
chr2 (14-119)||(37988643-37988749)
chr2 (254-347)||(2142710-2142803)
chr2 (140-200)||(3611154-3611217)
chr2 (257-326)||(43036615-43036684)
chr2 (257-285)||(16451177-16451205)


Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 9 - 363
Target Start/End: Complemental strand, 15248050 - 15247682
Alignment:
Q  9 agcacagacgcacgttttgcctaaagccataattttaagcttcataaaaatcacggtggtggagtattgggacgtgatatttgtgctcccaccaccaaac 108  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  15248050 agcacagacgcacgttttgcctaaagccacaattttaagcttcataaaaatcacggtggtggagcattgggacctgatatttgtgctcccaccaccaaac 15247951  T
Q  109 caaacagccacgtaggcttgtttggataaatatgataagtgtttatgtataaatagtttctatagcaa-aaaatataaagttaaattgtttttcgtaagt 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||    
T  15247950 caaacagccacgtaggcttgtttggataaatatgataagtgtttatgtataaatagtttctatagcaaaaaaatataaagttaaattgtttttcgtacgt 15247851  T
Q  208 taattataa-------------gttattttatagaactttgaaaataagtcgnnnnnnnctaatgaacaatgtcataagttgttttcataaattttctta 294  Q
    |||||||||             |||||||||| ||||||||||||||||| |       |||||||||||||||||||||||||||||||||||||||||    
T  15247850 taattataagttgttttcatatgttattttattgaactttgaaaataagttgaaaaaaactaatgaacaatgtcataagttgttttcataaattttctta 15247751  T
Q  295 ttcactctcacaaaacttatgtaagtagataaatttaaataagtcaaatcaaaaaggtctatagtctac 363  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||    
T  15247750 ttcattctcacaaaacttatgtaagtagataaattcaaataagtcaaatcaaacaggtctaaagtctac 15247682  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 347
Target Start/End: Complemental strand, 10758260 - 10758178
Alignment:
Q  265 tgtcataagttgttttcataaattttcttattcactctcacaaaacttatgtaagtagataaatttaaataagtcaaatcaaa 347  Q
    ||||||||| |||||||||||||| | | |  || ||||||||||||||||| || |||||| || ||||||||||| |||||    
T  10758260 tgtcataagctgttttcataaattctatcaaacagtctcacaaaacttatgttagcagataagttcaaataagtcaattcaaa 10758178  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 347
Target Start/End: Complemental strand, 32840997 - 32840907
Alignment:
Q  257 atgaacaatgtcataagttgttttcataaattttcttattcactctcacaaaacttatgtaagtagataaatttaaataagtcaaatcaaa 347  Q
    ||||||||||||||||||||||||||||| || ||  |  || |||| |||||||| ||| |||||||||  | || |||||||| |||||    
T  32840997 atgaacaatgtcataagttgttttcataagttctcccaaacagtctcgcaaaacttgtgtgagtagataagctcaagtaagtcaattcaaa 32840907  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 326
Target Start/End: Complemental strand, 1058091 - 1058019
Alignment:
Q  254 ctaatgaacaatgtcataagttgttttcataaattttcttattcactctcacaaaacttatgtaagtagataa 326  Q
    |||||||| |||||||||||  ||||||| || || ||  |  || |||||||||||||||||||||||||||    
T  1058091 ctaatgaaaaatgtcataagcagttttcaaaagttctcccaaacagtctcacaaaacttatgtaagtagataa 1058019  T

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Target: chr1 (Bit Score: 79; Significance: 8e-37; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 28024328 - 28024438
Alignment:
Q  9 agcacagacgcacgttttgcctaaagccataattttaagcttcataaaaatcacggtggtggagtattgggacgtgatatttgtgctcccaccaccaaac 108  Q
    ||||||||||||||||||||  ||| ||| ||||||||||||||||||||||||||  |||||| ||||||||| |||||||||||||||||||||||||    
T  28024328 agcacagacgcacgttttgcaaaaatccacaattttaagcttcataaaaatcacggcagtggagcattgggacgcgatatttgtgctcccaccaccaaac 28024427  T
Q  109 caaacagccac 119  Q
    |||||||||||    
T  28024428 caaacagccac 28024438  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 341
Target Start/End: Original strand, 489249 - 489333
Alignment:
Q  257 atgaacaatgtcataagttgttttcataaattttcttattcactctcacaaaacttatgtaagtagataaatttaaataagtcaa 341  Q
    |||| |||||||||||||||||||||||| ||||  ||  || ||| |||||| |||||| |||||||||  | |||||||||||    
T  489249 atgagcaatgtcataagttgttttcataagtttttctaaacagtcttacaaaaattatgttagtagataatctgaaataagtcaa 489333  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 340
Target Start/End: Complemental strand, 39976220 - 39976138
Alignment:
Q  258 tgaacaatgtcataagttgttttcataaattttcttattcactctcacaaaacttatgtaagtagataaatttaaataagtca 340  Q
    ||||||||||||||| || ||||||||| || ||| |  || | ||||||||||||||| |||||||||  | ||||||||||    
T  39976220 tgaacaatgtcataaattattttcataagttctctcaaacagtttcacaaaacttatgtcagtagataatctcaaataagtca 39976138  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 340
Target Start/End: Original strand, 6557074 - 6557114
Alignment:
Q  300 tctcacaaaacttatgtaagtagataaatttaaataagtca 340  Q
    ||||||||||||||||| ||||||||| || ||||||||||    
T  6557074 tctcacaaaacttatgttagtagataagttcaaataagtca 6557114  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 15 - 114
Target Start/End: Original strand, 503699 - 503798
Alignment:
Q  15 gacgcacgttttgcctaaagccataattttaagcttcataaaaatcacggtggtggagtattgggacgtgatatttgtgctcccaccaccaaaccaaaca 114  Q
    |||||||||||||| |||| | |  ||||| ||||||||||||||||| ||||| ||| ||||||||| ||||||| || ||||||||||||||||||||    
T  503699 gacgcacgttttgcttaaatctactattttgagcttcataaaaatcacagtggttgagcattgggacgcgatatttttgttcccaccaccaaaccaaaca 503798  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 341
Target Start/End: Original strand, 11064727 - 11064809
Alignment:
Q  259 gaacaatgtcataagttgttttcataaattttcttattcactctcacaaaacttatgtaagtagataaatttaaataagtcaa 341  Q
    ||||||||||||||| | ||||||||| || ||| |  || |||||||||||||||||  ||||||||| | |||||| ||||    
T  11064727 gaacaatgtcataagctattttcataagttctctcaaacaatctcacaaaacttatgttggtagataaactcaaataaatcaa 11064809  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 46 - 107
Target Start/End: Complemental strand, 23764756 - 23764695
Alignment:
Q  46 agcttcataaaaatcacggtggtggagtattgggacgtgatatttgtgctcccaccaccaaa 107  Q
    |||||||||||||||||||| || || |||||||||| ||||||||||| ||||||||||||    
T  23764756 agcttcataaaaatcacggtagttgaatattgggacgagatatttgtgcccccaccaccaaa 23764695  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 266 - 335
Target Start/End: Complemental strand, 33630499 - 33630430
Alignment:
Q  266 gtcataagttgttttcataaattttcttattcactctcacaaaacttatgtaagtagataaatttaaata 335  Q
    |||||||||| |||| |||||||||||||  || ||||| |||||||||||||||| |||| || |||||    
T  33630499 gtcataagttattttaataaattttcttaaacaatctcataaaacttatgtaagtaaataacttcaaata 33630430  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 48949162 - 48949254
Alignment:
Q  9 agcacagacgcacgttttgcctaaagccataattttaagcttcataaaaatcacggtggtggagtattgggacgtgatatttgtgctcccacc 101  Q
    |||| ||||||||||| |||| |||||||  ||||| |||||| ||||||||||||| || ||| ||||||| ||||||||| |||| |||||    
T  48949162 agcatagacgcacgttctgcccaaagccactattttgagcttcttaaaaatcacggtagttgagcattgggatgtgatatttatgcttccacc 48949254  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 347
Target Start/End: Complemental strand, 42747791 - 42747703
Alignment:
Q  260 aacaatgtcataa-gttgttttcataaattttcttattcactctcacaaaacttatgtaagtagataaatttaaataagtcaaatcaaa 347  Q
    ||||||||||||| ||||||||||||| || ||  |  || |||||||| ||||||| ||||||||||| | |||||||||||| ||||    
T  42747791 aacaatgtcataaagttgttttcataagttctcaaaaacagtctcacaatacttatggaagtagataaactcaaataagtcaaaccaaa 42747703  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Complemental strand, 25447213 - 25447172
Alignment:
Q  300 tctcacaaaacttatgtaagtagataaatttaaataagtcaa 341  Q
    ||||||||||||||||| |||||||||| | |||||||||||    
T  25447213 tctcacaaaacttatgtcagtagataaactcaaataagtcaa 25447172  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 290
Target Start/End: Complemental strand, 30668975 - 30668947
Alignment:
Q  262 caatgtcataagttgttttcataaatttt 290  Q
    |||||||||||||||||||||||||||||    
T  30668975 caatgtcataagttgttttcataaatttt 30668947  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 326
Target Start/End: Original strand, 39980797 - 39980857
Alignment:
Q  266 gtcataagttgttttcataaattttcttattcactctcacaaaacttatgtaagtagataa 326  Q
    |||||||| ||||||||||| || |||||  || ||||||||||||||||  |||||||||    
T  39980797 gtcataagctgttttcataagttctcttaaacagtctcacaaaacttatgctagtagataa 39980857  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 119
Target Start/End: Original strand, 32274457 - 32274527
Alignment:
Q  49 ttcataaaaatcacggtggtggagtattgggacgtgatatttgtgctcccaccaccaaaccaaacagccac 119  Q
    |||||||||| |||||| || ||| ||||||||||||||||| || | |||| ||||||||||||| ||||    
T  32274457 ttcataaaaaccacggtagttgagcattgggacgtgatatttttgtttccacgaccaaaccaaacaaccac 32274527  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 86 - 119
Target Start/End: Original strand, 32005741 - 32005774
Alignment:
Q  86 tatttgtgctcccaccaccaaaccaaacagccac 119  Q
    ||||||||||||||||||||||||||||||||||    
T  32005741 tatttgtgctcccaccaccaaaccaaacagccac 32005774  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 337
Target Start/End: Original strand, 33678839 - 33678919
Alignment:
Q  257 atgaacaatgtcataagttgttttcataaattttcttattcactctcacaaaacttatgtaagtagataaatttaaataag 337  Q
    ||||||||||| ||||||||||||||||| || ||  |     |||||||||||||||| |||||||||| ||||||||||    
T  33678839 atgaacaatgttataagttgttttcataagttctcccaaattgtctcacaaaacttatgcaagtagataagtttaaataag 33678919  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 265 - 352
Target Start/End: Complemental strand, 19302566 - 19302479
Alignment:
Q  265 tgtcataagttgttttcataaattttcttattcactctcacaaaacttatgtaagtagataaatttaaataagtcaaatcaaaaaggt 352  Q
    ||||||||| |||||||||||||| ||  |   | ||||||||||||||||| |||||||||  | ||||||||||| ||||| ||||    
T  19302566 tgtcataagctgttttcataaattctcccaaatattctcacaaaacttatgtcagtagataagctcaaataagtcaattcaaacaggt 19302479  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 326
Target Start/End: Complemental strand, 19022588 - 19022527
Alignment:
Q  265 tgtcataagttgttttcataaattttcttattcactctcacaaaacttatgtaagtagataa 326  Q
    |||||||||||||||||||||||| ||  |  || |||||||||||| |||| |||||||||    
T  19022588 tgtcataagttgttttcataaattctcccaaacaatctcacaaaactcatgtcagtagataa 19022527  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 315
Target Start/End: Complemental strand, 44989687 - 44989630
Alignment:
Q  258 tgaacaatgtcataagttgttttcataaattttcttattcactctcacaaaacttatg 315  Q
    |||||||||||| ||||||||||||||| |||||  |  || ||||||||||||||||    
T  44989687 tgaacaatgtcagaagttgttttcataagttttcccaaacagtctcacaaaacttatg 44989630  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 347
Target Start/End: Complemental strand, 27330079 - 27329997
Alignment:
Q  265 tgtcataagttgttttcataaattttcttattcactctcacaaaacttatgtaagtagataaatttaaataagtcaaatcaaa 347  Q
    |||||||||||||||||||||||  ||| |  || |||||  ||||||||||||||||||||  ||||||||| ||| |||||    
T  27330079 tgtcataagttgttttcataaatcctctcaaacaatctcattaaacttatgtaagtagataagcttaaataagccaattcaaa 27329997  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 327
Target Start/End: Original strand, 1706681 - 1706751
Alignment:
Q  257 atgaacaatgtcataagttgttttcataaattttcttattcactctcacaaaacttatgtaagtagataaa 327  Q
    |||||||||| |||||| ||||||||||| || ||| |  |  ||||||||||||||||| ||||||||||    
T  1706681 atgaacaatgccataagctgttttcataatttctctcaaaccgtctcacaaaacttatgtcagtagataaa 1706751  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Complemental strand, 15173271 - 15173230
Alignment:
Q  300 tctcacaaaacttatgtaagtagataaatttaaataagtcaa 341  Q
    ||||||||||||||||| ||||||||| || |||||||||||    
T  15173271 tctcacaaaacttatgtcagtagataagttcaaataagtcaa 15173230  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 341
Target Start/End: Original strand, 41336862 - 41336903
Alignment:
Q  300 tctcacaaaacttatgtaagtagataaatttaaataagtcaa 341  Q
    ||||||||||||||||| |||||||||| | |||||||||||    
T  41336862 tctcacaaaacttatgtgagtagataaactcaaataagtcaa 41336903  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 119
Target Start/End: Original strand, 37988643 - 37988749
Alignment:
Q  14 agacgcacgttttgcctaaagcca-taattttaagcttcataaaaatcacggtggtggagtattgggacgtgatatttgtgctcccaccaccaaaccaaa 112  Q
    ||||||| |||||| | ||||| | |||| || |||||||  ||||||||||| || ||  ||||  | |||||||||||||| ||||||||||||||||    
T  37988643 agacgcatgttttgaccaaagctactaatcttgagcttcaccaaaatcacggtagttgaacattgaaaagtgatatttgtgcttccaccaccaaaccaaa 37988742  T
Q  113 cagccac 119  Q
     ||||||    
T  37988743 tagccac 37988749  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 347
Target Start/End: Original strand, 2142710 - 2142803
Alignment:
Q  254 ctaatgaacaatgtcataagttgttttcataaattttcttattcactctcacaaaacttatgtaagtagataaatttaaataagtcaaatcaaa 347  Q
    |||||||||| ||||| || |||||||||||| || ||  |  || ||||| |||||||||| | ||||||||| | |||||||||||| ||||    
T  2142710 ctaatgaacattgtcacaacttgttttcataagttctcccaaacagtctcataaaacttatgcatgtagataaactcaaataagtcaaaccaaa 2142803  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 200
Target Start/End: Original strand, 3611154 - 3611217
Alignment:
Q  140 atgataagtgtttatgtataaatagtttctatagcaaaa---aatataaagttaaattgttttt 200  Q
    |||||||||| |||||||||| |  ||||||||||||||   || |||||||||||||||||||    
T  3611154 atgataagtgcttatgtataagttatttctatagcaaaaggtaaaataaagttaaattgttttt 3611217  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 326
Target Start/End: Original strand, 43036615 - 43036684
Alignment:
Q  257 atgaacaatgtcataagttgttttcataaattttcttattcactctcacaaaacttatgtaagtagataa 326  Q
    ||||| ||||||||||| |||| |||||| |||||  |   ||||||||||||||||||||| |||||||    
T  43036615 atgaataatgtcataagatgttctcataagttttcccaaatactctcacaaaacttatgtaactagataa 43036684  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 285
Target Start/End: Original strand, 16451177 - 16451205
Alignment:
Q  257 atgaacaatgtcataagttgttttcataa 285  Q
    |||||||||||||||||||||||||||||    
T  16451177 atgaacaatgtcataagttgttttcataa 16451205  T

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