View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18196_low_29 (Length: 359)
Name: NF18196_low_29
Description: NF18196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18196_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 15 - 341
Target Start/End: Original strand, 36828703 - 36829044
Alignment:
| Q |
15 |
aagacaggagaactggttttactcaaaaccgaaaagctaggtataaatgtgtaagagtagactctaagacagaactcacagttcacgcagagtata-atg |
113 |
Q |
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| T |
36828703 |
aagacaggagaactggttttactcaaaatcgaaaagctaggtataattgtgtaagagtagactctaagacagaactcacagttcacgcagagtattgatg |
36828802 |
T |
|
| Q |
114 |
gagaatcaaacaaaccagagtcatgtttgaggggatgaggcattcttcatgttaacgatacttcactcacctttttatctttggattatttagatcagac |
213 |
Q |
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| T |
36828803 |
gagaaccaaacaagccagagtcatgtttgaggggatgaggcattcttcatgttaacgatacttcactcacctttttatctctagattatttagatcagac |
36828902 |
T |
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| Q |
214 |
accacaagaattgca--------------ttaataaatagtaaataactcaagttgggcaattctatatacacacttaacttgtagtgtaagttattagg |
299 |
Q |
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| T |
36828903 |
accacaagaattgcattaataataaccctttaataaatagtaaataactcaagttgggcaattctatatacacgcttaacttgtagtgtaagttattagg |
36829002 |
T |
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| Q |
300 |
taactaactaactaacttcttcataagtaaatcaactaagac |
341 |
Q |
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| T |
36829003 |
taactaactaactaaattcttcataagtaaatcaactaagac |
36829044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 312
Target Start/End: Complemental strand, 2799208 - 2799162
Alignment:
| Q |
266 |
tatacacacttaacttgtagtgtaagttattaggtaactaactaact |
312 |
Q |
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| T |
2799208 |
tatatacacttaacttgtaatgcaagttattaggtaactaactaact |
2799162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 309
Target Start/End: Original strand, 31129178 - 31129223
Alignment:
| Q |
262 |
tctatatacacacttaacttgtagtgtaagttattaggtaactaacta |
309 |
Q |
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|||||||||||| |||||||||| ||||| ||||||||||||||||| |
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| T |
31129178 |
tctatatacaca--taacttgtagagtaaggtattaggtaactaacta |
31129223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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