View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18196_low_35 (Length: 331)
Name: NF18196_low_35
Description: NF18196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18196_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 326
Target Start/End: Original strand, 39471750 - 39472051
Alignment:
| Q |
19 |
ctttgtcctacatagtttttaacgatctctatagacacgacatatataaatgataaatgatattgattctctttt-tgggtaaataaatgatactaatta |
117 |
Q |
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| T |
39471750 |
ctttgtcctacatagtttttaacgatctctatagacacgacatatataaatgata-------ttgattcttttttttgggtaaataaatgatactaatta |
39471842 |
T |
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| Q |
118 |
tgtacgctaattcatcctgatcctatataataaaacatgtatatcaaatgtcaaacacagtcacatagtcactcacacacacttctaacacaaagaaaaa |
217 |
Q |
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| T |
39471843 |
tgtacactaattcatcctaatcctatataataaaacatgtatatcaaatgtcaaacacagtcacatagtcactcacacacacttctaacacaaagaaaaa |
39471942 |
T |
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| Q |
218 |
gagagtcactcatactaagtgtatatccattttcctgtgctccaagatgaagaaagcagaagtggtgtttgtctcttttccggctgagggtcatatagtt |
317 |
Q |
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| T |
39471943 |
gagagtcactcatactaagtgtataaccattttcctgtgctccaagatgaagaaagcagaagtggtgtttgtcccttttccggctgagggtcatatagtt |
39472042 |
T |
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| Q |
318 |
tcttctctc |
326 |
Q |
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||| ||||| |
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| T |
39472043 |
tctgctctc |
39472051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 48 - 172
Target Start/End: Original strand, 39454409 - 39454536
Alignment:
| Q |
48 |
tatagacacgacatatataaatga---taaatgatattgattctctttttgggtaaataaatgatactaattatgtacgctaattcatcctgatcctata |
144 |
Q |
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| T |
39454409 |
tatacacatgacatatataaatgatgataaatgatactgattcttttttttggtaaataaatgatgctaattctgtacactaattcattttgttcctatg |
39454508 |
T |
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| Q |
145 |
taataaaacatgtatatcaaatgtcaaa |
172 |
Q |
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| T |
39454509 |
taataaaacatgtacatcaaatatcaaa |
39454536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 298
Target Start/End: Original strand, 39450921 - 39450987
Alignment:
| Q |
233 |
taagtgtatatcc-attttcctgtgctccaagatgaagaaagcagaagtggtgtttgtctcttttcc |
298 |
Q |
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| T |
39450921 |
taagtgtatatcctattatcctgtgcttcaagatgaagaaagcagaagtggtgtttatcccttttcc |
39450987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 250 - 298
Target Start/End: Original strand, 39460189 - 39460237
Alignment:
| Q |
250 |
tcctgtgctccaagatgaagaaagcagaagtggtgtttgtctcttttcc |
298 |
Q |
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| T |
39460189 |
tcctgtgctccaagatgaagaaagcagaagttgtgtttatcccttttcc |
39460237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 320
Target Start/End: Complemental strand, 39464764 - 39464694
Alignment:
| Q |
250 |
tcctgtgctccaagatgaagaaagcagaagtggtgtttgtctcttttccggctgagggtcatatagtttct |
320 |
Q |
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| T |
39464764 |
tcctgtgcttcaaaatgaagaaagcagaagtagtgtttatcccttttcccgctgtaggtcatctagtttct |
39464694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 39475453 - 39475493
Alignment:
| Q |
258 |
tccaagatgaagaaagcagaagtggtgtttgtctcttttcc |
298 |
Q |
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| T |
39475453 |
tccaagatgaagaaagcagaagtggtgtttatcccttttcc |
39475493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 320
Target Start/End: Complemental strand, 39470984 - 39470917
Alignment:
| Q |
253 |
tgtgctccaagatgaagaaagcagaagtggtgtttgtctcttttccggctgagggtcatatagtttct |
320 |
Q |
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| T |
39470984 |
tgtgctccaacatgaagaaagtggaagtggtgtttatcccttttcccgctgtaggtcatctagtttct |
39470917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 29310298 - 29310231
Alignment:
| Q |
19 |
ctttgtcctacatagtttttaacgatctctatagacacgacatatataaatgataaatgatattgatt |
86 |
Q |
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| T |
29310298 |
ctttgccctacatagtttttcatgatccctatagacacaacatatataaattataaatgatactgatt |
29310231 |
T |
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