View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18196_low_37 (Length: 326)
Name: NF18196_low_37
Description: NF18196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18196_low_37 |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 18 - 320
Target Start/End: Complemental strand, 39567548 - 39567246
Alignment:
| Q |
18 |
aataatgaccttcaataaattgcacaattatcatgtaggcatcttgtctaaacaacattgccgacttgggggcaactgttttggactagaccaatgatca |
117 |
Q |
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| T |
39567548 |
aataatgaccttcaataaattgcacaattatcatgtaggcatcttgtctaaacaacattgccgacttgggggcaactgttttggactagaccaatgatca |
39567449 |
T |
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| Q |
118 |
atccagacttcgccttcatgaagacccattccttggattcactctaagctaaagggttgctgtcaaaattactgtacgtgtctaattgtctaaatagaga |
217 |
Q |
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| T |
39567448 |
atccagacttcgccttcatgaagacccattccttggattcactctaagctaaagggttgctgtcaaaattactgtacgtgtctaattgtctaaatagaga |
39567349 |
T |
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| Q |
218 |
tccaaccccaagagaaaggtatgcactgctaattctagctttcagtctctccaattcttactggcttgagcactgtaatgcttgcaggtactccctttgc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39567348 |
tccaaccccaagagaaaggtatgcactgctaattctagctttcagtctctccaattcttactggcttgagcactgtaatgcttgcaggtactccctttgc |
39567249 |
T |
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| Q |
318 |
ttc |
320 |
Q |
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||| |
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| T |
39567248 |
ttc |
39567246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 135 - 320
Target Start/End: Complemental strand, 39563503 - 39563324
Alignment:
| Q |
135 |
atgaagacccattccttggattcactctaagctaaagggttgctgtcaaaattactgtacgtgtctaattgtctaaatagagatccaaccccaagagaaa |
234 |
Q |
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| T |
39563503 |
atgaagacccattccttcgattcactctaagctaaaaggctactgtcaaaattattgtacatgtcta------taaatagagatccaactctaagagaaa |
39563410 |
T |
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| Q |
235 |
ggtatgcactgctaattctagctttcagtctctccaattcttactggcttgagcactgtaatgcttgcaggtactccctttgcttc |
320 |
Q |
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| T |
39563409 |
ggtatgcactgctacttctagctctcactctctcgaattcttactgaattaagcgttacaatgcttacaggtactccatttgcttc |
39563324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 71 - 287
Target Start/End: Complemental strand, 39572958 - 39572747
Alignment:
| Q |
71 |
aacattgccgacttgggggcaactgttttggactagaccaatgatcaatccagacttcgccttcatgaagacccattccttggattcactctaagctaaa |
170 |
Q |
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||||||||||||||||||||| ||||||||||| || ||||||| |||| |||| ||| |||||||||| || ||||||| | | ||| |||||||||| |
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| T |
39572958 |
aacattgccgacttgggggcatctgttttggacaaggccaatgaacaatgcagatttctccttcatgaatccctattccttcggtccaccctaagctaaa |
39572859 |
T |
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| Q |
171 |
gggttgctgtcaaaattactgtacgtgtctaattgtctaaatagagatccaaccccaagagaaaggtatgcactgctaattctagctttcagtctctcca |
270 |
Q |
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||||||| |||||| || |||| | | ||| || ||||||||| | | | |||||||| |||||||| ||||||||||||| ||| |||||| | |
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| T |
39572858 |
gggttgccttcaaaaatattgta-----caacatgtatatatagagatcaacctctaagagaaatgtatgcacagctaattctagctatcactctctcaa |
39572764 |
T |
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| Q |
271 |
attcttactggcttgag |
287 |
Q |
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| | |||||| |||||| |
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| T |
39572763 |
aattttactgacttgag |
39572747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 107
Target Start/End: Complemental strand, 39564724 - 39564641
Alignment:
| Q |
18 |
aataatgaccttcaataaattgcacaattatcatgtaggcatcttgtctaaacaacattgccgacttgggggcaactgttttggactaga |
107 |
Q |
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||||||||||||||||| ||||||||||||||| | ||||||||||| ||||| ||||||||| |||||||||||||||||||||| |
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| T |
39564724 |
aataatgaccttcaatacattgcacaattatcaagcaggcatcttgt-----caacactgccgactt-ggggcaactgttttggactaga |
39564641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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