View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18196_low_44 (Length: 299)

Name: NF18196_low_44
Description: NF18196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18196_low_44
NF18196_low_44
[»] chr6 (2 HSPs)
chr6 (181-282)||(20744437-20744538)
chr6 (86-132)||(20744384-20744430)
[»] chr3 (1 HSPs)
chr3 (94-132)||(430835-430873)
[»] chr5 (1 HSPs)
chr5 (211-279)||(16436667-16436735)
[»] chr2 (1 HSPs)
chr2 (100-132)||(30639079-30639111)


Alignment Details
Target: chr6 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 181 - 282
Target Start/End: Original strand, 20744437 - 20744538
Alignment:
Q  181 tggtctaatattatttctcaaaatactttgttttgaacaagctaaattatttcactgaaattgatatggagataatcgaacataagaccttgaggaggaa 280  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  20744437 tggtctaatattatttctcaaaataatttgttttaaacaagctaaattatttcactgaaattgacatggagataatcgaacatgagaccttgaggaggaa 20744536  T
Q  281 ca 282  Q
    ||    
T  20744537 ca 20744538  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 132
Target Start/End: Original strand, 20744384 - 20744430
Alignment:
Q  86 aagactcgagtaacatttcacacattgtgtccaagtatttttgtcga 132  Q
    ||||||| ||||| |||||||||||||||||||| ||||||||||||    
T  20744384 aagactcaagtaatatttcacacattgtgtccaattatttttgtcga 20744430  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 430873 - 430835
Alignment:
Q  94 agtaacatttcacacattgtgtccaagtatttttgtcga 132  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  430873 agtaatattttacacattgtgtccaagtatttttgtcga 430835  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 279
Target Start/End: Complemental strand, 16436735 - 16436667
Alignment:
Q  211 ttttgaacaagctaaattatttcactgaaattgatatggagataatcgaacataagaccttgaggagga 279  Q
    ||||||| ||| |||||||  ||||| |||||||||  | || |||||||||| |||||||||||||||    
T  16436735 ttttgaagaagttaaattagctcactcaaattgatactgtgaaaatcgaacatgagaccttgaggagga 16436667  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 132
Target Start/End: Original strand, 30639079 - 30639111
Alignment:
Q  100 atttcacacattgtgtccaagtatttttgtcga 132  Q
    |||| ||||||||||||||||||||||||||||    
T  30639079 attttacacattgtgtccaagtatttttgtcga 30639111  T

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