View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18196_low_5 (Length: 716)
Name: NF18196_low_5
Description: NF18196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18196_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 549; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 10 - 698
Target Start/End: Original strand, 22552931 - 22553621
Alignment:
| Q |
10 |
agaagcataggccatgtaaaatcaggatagattcttggtgtcaaatcactcaccaattcacttggtggacaaaccaccttatcaccttttggacacaaaa |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22552931 |
agaagcataggccatgtaaaatcaggatagattcttggtgtcaaatcactcaccaattcacttggtggacaaaccaccttatcaccttttggacacaaaa |
22553030 |
T |
|
| Q |
110 |
agaaagctagagattttcttgttgtcttgttgttcaccactgccctatgtaaacaactcttgtatctcccatttgaaagagcctaaacaaaaagagagtg |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22553031 |
agaaagctagagattttcttgttgtcttgttgttcaccactgccctatgtaaacaactcttgtatctcccatttgaaagagcctaaacaaaaagagagtg |
22553130 |
T |
|
| Q |
210 |
nnnnnnngttcaataacaccatcatacataaaatatgtggccaaaattcatgacccttttgctaaatatttatttnnnnnnnnntttagttacaaaaata |
309 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||| || ||||||||||||| |
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| T |
22553131 |
aaaaaaagttcaataacaccatcatacataaaatatgtggccaaaattcatgacccttttgttaagtatttctttaaaaaaaaattgagttacaaaaata |
22553230 |
T |
|
| Q |
310 |
attttttaaaaatagtttacttctagatannnnnnnnnn--gtttaagaatctaaaacaaaacaatgaaaactttcaaaagtgttgaaaagaaagagaac |
407 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22553231 |
attttttaaaaatagtttacttctagattttttttttgtttgtttaagaatctaaaacaaaacaatgaaaactttcaaaagtgttgaaaagaaagagaac |
22553330 |
T |
|
| Q |
408 |
ataacataccatgaaagtgtcaccaatattgacaacaaaagcattgaaatttggcctaatggaatgccattcattgtcaacaaaaacttgcaagccacca |
507 |
Q |
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| T |
22553331 |
ataacataccatgaaagtgtcaccaatattgacaacaaaagcattgaaatttggcctaatggaatgccactcattgtcaacaaaaacttgcaagccacca |
22553430 |
T |
|
| Q |
508 |
acttggtcttggtgtagaatggttaaagatgttggatcacaatgaggtccagttcctaaagtgagatcaggtttttgacatggtggataataattaagcc |
607 |
Q |
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| T |
22553431 |
acttggtcttggtgtagaatggttaaagatgttggatcacaatgaggtccagttcctaaagtgagatcaggtttttgacatggtgggtaataattaagtc |
22553530 |
T |
|
| Q |
608 |
tcattattgatttattctcttcnnnnnnntctctaaaacaatcttttccaactccaagactcattccaagaagctccattatccccaaaga |
698 |
Q |
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| T |
22553531 |
tcattattgatttattctcttcaaaaaaatctctaaaacaatcttttccaactccaagactcattccaagaagctccattatccccaaaga |
22553621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 148; Significance: 1e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 410 - 698
Target Start/End: Complemental strand, 46103549 - 46103261
Alignment:
| Q |
410 |
aacataccatgaaagtgtcaccaatattgacaacaaaagcattgaaatttggcctaatggaatgccattcattgtcaacaaaaacttgcaagccaccaac |
509 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||| || ||||||| |||||||||||||||| || |
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| T |
46103549 |
aacataccatgaaagtatcaccaatattgacaacaaaagcattgaaatgtgggctaatggaatgccattgatcgtcaacataaacttgcaagccacctac |
46103450 |
T |
|
| Q |
510 |
ttggtcttggtgtagaatggttaaagatgttggatcacaatgaggtccagttcctaaagtgagatcaggtttttgacatggtggataataattaagcctc |
609 |
Q |
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||| || ||||| |||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||| | ||||| ||||| |||||| |
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| T |
46103449 |
ttgatcctggtgaagaatggttaaagatgttggatcacaatgaggtccagtgcctagagtgagctcaggtttttgacaagtaggatagtaattgagcctc |
46103350 |
T |
|
| Q |
610 |
attattgatttattctcttcnnnnnnntctctaaaacaatcttttccaactccaagactcattccaagaagctccattatccccaaaga |
698 |
Q |
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|||||||| |||||||||| || |||||| | |||| ||||||||||| |||||||| |||| ||||||||| || ||||| |
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| T |
46103349 |
attattgaactattctcttcaaaaaattccctaaaatgagctttaccaactccaaggctcattcctagaatctccattatacctaaaga |
46103261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 60 - 195
Target Start/End: Complemental strand, 46104234 - 46104099
Alignment:
| Q |
60 |
caccaattcacttggtggacaaaccaccttatcaccttttggacacaaaaagaaagctagagattttcttgttgtcttgttgttcaccactgccctatgt |
159 |
Q |
| |
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||||||||||| ||||||| ||||| ||||||| | |||||||||||||||||| |||||||| ||||| | | | |||| |||||||||||||| |
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| T |
46104234 |
caccaattcacatggtggagttaccactttatcacttaatggacacaaaaagaaagcaagagatttccttgtcttttcgctgtttaccactgccctatgc |
46104135 |
T |
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| Q |
160 |
aaacaactcttgtatctcccatttgaaagagcctaa |
195 |
Q |
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||||| ||||||||||||||||||||||| |||||| |
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| T |
46104134 |
aaacagctcttgtatctcccatttgaaagtgcctaa |
46104099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 506 - 596
Target Start/End: Original strand, 12872603 - 12872693
Alignment:
| Q |
506 |
caacttggtcttggtgtagaatggttaaagatgttggatcacaatgaggtccagttcctaaagtgagatcaggtttttgacatggtggata |
596 |
Q |
| |
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||||||| |||||||| ||||||||||| || || || |||||||| |||||||||||||||| | |||||| |||| ||||||||||| |
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| T |
12872603 |
caacttgatcttggtggagaatggttaaggaagtagggtcacaatggggtccagttcctaaagctaaatcaggatttttgcatggtggata |
12872693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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