View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18196_low_53 (Length: 271)
Name: NF18196_low_53
Description: NF18196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18196_low_53 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 8 - 256
Target Start/End: Original strand, 14340243 - 14340491
Alignment:
| Q |
8 |
gtgagatgaaaaagaagtgaatggtgaaaaactgaacctatatatgtgatgttatttatagggacagaaccacctctcagaagtggccttccaaggattg |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14340243 |
gtgacatgaaaaagaagtgaatggtgaaaaactgaacctatatatgtgatgttatttatagggacagaaccacctctcagaagtggccttccaaggattg |
14340342 |
T |
|
| Q |
108 |
aagatttctcaaaagccatttacaccattgatattggacaaaatgatattggttatggtctgcagaagccgaactcttcagaggaagaagttaaaaggtc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14340343 |
aagatttctcaaaagccatttacaccattgatattggacaaaatgatattagctatggtctgcagaagccgaactcttcagaggaagaagttaaaaggtc |
14340442 |
T |
|
| Q |
208 |
aattcctgatatcttgagccaattcacccaagcagtgcaggtaataatt |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
14340443 |
aattcctgatatcttgagccaattcacccaagcagtgcaggtgataatt |
14340491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 8 - 256
Target Start/End: Original strand, 3601373 - 3601617
Alignment:
| Q |
8 |
gtgagatgaaaaagaagtgaatggtgaaaaactgaacctatatatgtgatgttatttatagggacagaaccacctctcagaagtggccttccaaggattg |
107 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
3601373 |
gtgacatgaaaaagaagtgaatggtgaaaaactgaacctat----gtgatgtcatttatagggacagaaccacctctcagaagtggcgttccaaggactg |
3601468 |
T |
|
| Q |
108 |
aagatttctcaaaagccatttacaccattgatattggacaaaatgatattggttatggtctgcagaagccgaactcttcagaggaagaagttaaaaggtc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
3601469 |
aagatttctcaaaagccatttacaccattgatattggacaaaatgatattggctatggtctgcagaagccgaactcttcagaggaagaagttagaaggtc |
3601568 |
T |
|
| Q |
208 |
aattcctgatatcttgagccaattcacccaagcagtgcaggtaataatt |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3601569 |
aattcctgatatcttgagccaattcacccaagcagtgcaggtaataatt |
3601617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 98 - 252
Target Start/End: Original strand, 3568467 - 3568615
Alignment:
| Q |
98 |
ccaaggattgaagatttctcaaaagccatttacaccattgatattggacaaaatgatattggttatggtctgcagaagccgaactcttcagaggaagaag |
197 |
Q |
| |
|
||||||| | |||||||||| || ||||||||||| |||||||||| ||||||||||||||| | ||||||||||||| |||||||||||| ||| |
|
|
| T |
3568467 |
ccaaggactaaagatttctctaaggccatttacacaattgatattgcacaaaatgatattggctttggtctgcagaag------tcttcagaggaacaag |
3568560 |
T |
|
| Q |
198 |
ttaaaaggtcaattcctgatatcttgagccaattcacccaagcagtgcaggtaat |
252 |
Q |
| |
|
||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
3568561 |
ttagaaggtcaattcctgacatcttgagccaattctcccaagcagtgcaggtaat |
3568615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 178 - 252
Target Start/End: Original strand, 3590634 - 3590708
Alignment:
| Q |
178 |
gaactcttcagaggaagaagttaaaaggtcaattcctgatatcttgagccaattcacccaagcagtgcaggtaat |
252 |
Q |
| |
|
|||| ||||| ||||| |||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
3590634 |
gaacacttcaaaggaacaagttagaaggtcatttcctgatatcttgagccaattcttccaagcagtgcaggtaat |
3590708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 61 - 252
Target Start/End: Original strand, 1408690 - 1408875
Alignment:
| Q |
61 |
atttatagggacagaaccacctctcagaagtggccttccaaggattgaagatttctcaaaagccatttacaccattgatattggacaaaatgatattggt |
160 |
Q |
| |
|
|||||||||||||||| ||||| ||| |||||| |||||||||| ||| || ||||| || ||| ||||||| ||||||||||||||||||||| ||| |
|
|
| T |
1408690 |
atttatagggacagaatcacctttcaaaagtggtcttccaaggaatgaggaattctctaaggccctttacacaattgatattggacaaaatgatcttgcc |
1408789 |
T |
|
| Q |
161 |
tatggtctgcagaagccgaactcttcagaggaagaagttaaaaggtcaattcctgatatcttgagccaattcacccaagcagtgcaggtaat |
252 |
Q |
| |
|
|||| | ||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1408790 |
attggtttacagaa------cacttcagaggaacaagttaaaaggtcaattcctgatatcttgagccaattctcccaagcagtgcaggtaat |
1408875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 252
Target Start/End: Original strand, 1416682 - 1416861
Alignment:
| Q |
67 |
agggacagaaccacctctcagaagtggccttccaaggattgaagatttctcaaaagccatttacaccattgatattggacaaaatgatattggttatggt |
166 |
Q |
| |
|
||||||||||||| |||||| |||||| ||||||||| ||| |||||||| || ||| ||||||| ||||||||||||||||||||| ||| | ||||| |
|
|
| T |
1416682 |
agggacagaaccatctctcaaaagtggtcttccaaggcctgaggatttctctaaggccctttacacaattgatattggacaaaatgatcttgctcatggt |
1416781 |
T |
|
| Q |
167 |
ctgcagaagccgaactcttcagaggaagaagttaaaaggtcaattcctgatatcttgagccaattcacccaagcagtgcaggtaat |
252 |
Q |
| |
|
| || || ||||||||||| ||||| |||||||||||||||| || |||||| | ||| ||||| ||||| ||||||| |
|
|
| T |
1416782 |
tttca------atacacttcagaggaacaagttcaaaggtcaattcctgaaatattgagcaatttctcccaatcagtgaaggtaat |
1416861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 67 - 252
Target Start/End: Original strand, 1411832 - 1412011
Alignment:
| Q |
67 |
agggacagaaccacctctcagaagtggccttccaaggattgaagatttctcaaaagccatttacaccattgatattggacaaaatgatattggttatggt |
166 |
Q |
| |
|
|||||| ||||| ||||||| |||||| |||||| || ||| || ||||| || ||| ||||||| ||||||||||||||||||||| ||| |||||| |
|
|
| T |
1411832 |
agggacggaaccgcctctcaaaagtggtcttccagggcctgaggacttctctaaggccctttacacaattgatattggacaaaatgatcttgcctatggt |
1411931 |
T |
|
| Q |
167 |
ctgcagaagccgaactcttcagaggaagaagttaaaaggtcaattcctgatatcttgagccaattcacccaagcagtgcaggtaat |
252 |
Q |
| |
|
| | | | || ||||||| ||| ||||| |||||||||||||||| || ||||||||||| ||||||||||| ||||||| |
|
|
| T |
1411932 |
tttc----gac--acacttcagaagaacaagttcaaaggtcaattcctgaaatattgagccaattgtcccaagcagtgaaggtaat |
1412011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 154
Target Start/End: Original strand, 1421141 - 1421228
Alignment:
| Q |
67 |
agggacagaaccacctctcagaagtggccttccaaggattgaagatttctcaaaagccatttacaccattgatattggacaaaatgat |
154 |
Q |
| |
|
||||||||||||| |||||| |||||| ||||||||| ||| || |||| | ||| ||||||| ||||||||||||| ||||||| |
|
|
| T |
1421141 |
agggacagaaccatctctcaaaagtggtcttccaaggcctgaggacttctgtacggccctttacacaattgatattggactaaatgat |
1421228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University